Variant report

Variant	rs56093705
Chromosome Location	chr1:166984154-166984155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1041238	0.96[ASN][1000 genomes]
rs10918608	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11802666	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11805946	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12118335	0.99[ASN][1000 genomes]
rs12126991	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12131832	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12133327	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145919	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12564877	0.94[ASN][1000 genomes]
rs12569084	0.81[ASN][1000 genomes]
rs2296837	0.81[ASN][1000 genomes]
rs2312487	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3736988	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41269702	0.81[ASN][1000 genomes]
rs4657621	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61447801	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61606407	0.81[ASN][1000 genomes]
rs6427053	0.97[ASN][1000 genomes]
rs6655947	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662130	0.91[ASN][1000 genomes]
rs6665341	0.81[ASN][1000 genomes]
rs6667210	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6673622	0.91[ASN][1000 genomes]
rs6681562	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6681571	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6682062	0.81[ASN][1000 genomes]
rs6694465	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6695609	0.81[ASN][1000 genomes]
rs6696203	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6697417	0.83[ASN][1000 genomes]
rs6699159	0.83[ASN][1000 genomes]
rs7511933	0.91[ASN][1000 genomes]
rs7533688	0.83[ASN][1000 genomes]
rs7545911	0.81[ASN][1000 genomes]
rs7550698	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004148	chr1:166951869-167016311	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2750815	chr1:166953866-167180342	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166980400-166985000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:166980400-166985400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:166980800-166985200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:166983200-166984200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links