Variant report

Variant	rs6697417
Chromosome Location	chr1:166959455-166959456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1041238	0.86[ASN][1000 genomes]
rs10918608	0.87[ASN][1000 genomes]
rs11578336	0.87[ASN][1000 genomes]
rs11802666	0.89[ASN][1000 genomes]
rs11805946	0.90[ASN][1000 genomes]
rs12118335	0.82[ASN][1000 genomes]
rs12126991	0.88[ASN][1000 genomes]
rs12131832	0.86[ASN][1000 genomes]
rs12133327	0.83[ASN][1000 genomes]
rs12564877	0.87[ASN][1000 genomes]
rs12569084	0.86[ASN][1000 genomes]
rs2296837	0.90[ASN][1000 genomes]
rs2312487	0.88[ASN][1000 genomes]
rs3736988	0.90[ASN][1000 genomes]
rs41269702	0.90[ASN][1000 genomes]
rs56093705	0.83[ASN][1000 genomes]
rs61447801	0.90[ASN][1000 genomes]
rs61606407	0.90[ASN][1000 genomes]
rs6427053	0.80[ASN][1000 genomes]
rs6655947	0.83[ASN][1000 genomes]
rs6662130	0.90[ASN][1000 genomes]
rs6665341	0.90[ASN][1000 genomes]
rs6673622	0.90[ASN][1000 genomes]
rs6681562	0.86[ASN][1000 genomes]
rs6681571	0.85[ASN][1000 genomes]
rs6682062	0.90[ASN][1000 genomes]
rs6695609	0.90[ASN][1000 genomes]
rs6696203	0.86[ASN][1000 genomes]
rs6699159	0.88[ASN][1000 genomes]
rs7511933	0.90[ASN][1000 genomes]
rs7533688	0.88[ASN][1000 genomes]
rs7545911	0.90[ASN][1000 genomes]
rs7550698	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004148	chr1:166951869-167016311	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2750815	chr1:166953866-167180342	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166958400-166964600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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