Variant report

Variant	rs6665341
Chromosome Location	chr1:166947018-166947019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166945300..166947626-chr1:166953556..166955132,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1041238	0.85[ASN][1000 genomes]
rs10918608	0.86[ASN][1000 genomes]
rs11578336	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11802666	0.87[ASN][1000 genomes]
rs11805946	0.88[ASN][1000 genomes]
rs12118335	0.81[ASN][1000 genomes]
rs12126991	0.86[ASN][1000 genomes]
rs12131832	0.85[ASN][1000 genomes]
rs12133327	0.81[ASN][1000 genomes]
rs12564877	0.86[ASN][1000 genomes]
rs12569084	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2312487	0.86[ASN][1000 genomes]
rs3736988	0.88[ASN][1000 genomes]
rs41269702	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56093705	0.81[ASN][1000 genomes]
rs61447801	0.88[ASN][1000 genomes]
rs61606407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6655947	0.81[ASN][1000 genomes]
rs6662130	0.88[ASN][1000 genomes]
rs6673622	0.88[ASN][1000 genomes]
rs6681562	0.85[ASN][1000 genomes]
rs6681571	0.84[ASN][1000 genomes]
rs6682062	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695609	1.00[ASN][1000 genomes]
rs6696203	0.85[ASN][1000 genomes]
rs6697417	0.90[ASN][1000 genomes]
rs6699159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7511933	0.88[ASN][1000 genomes]
rs7533688	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7545911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550698	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166945400-166950200	Weak transcription	HSMM	muscle
2	chr1:166945600-166947400	Weak transcription	GM12878-XiMat	blood
3	chr1:166946000-166950000	Weak transcription	Left Ventricle	heart
4	chr1:166946400-166947800	Weak transcription	HSMMtube	muscle
5	chr1:166946400-166950000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:166946400-166950000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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