Variant report

Variant	rs6696764
Chromosome Location	chr1:246382957-246382958
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:246377070..246379889-chr1:246380725..246383126,2	MCF-7	breast:

Extended variants
information (count: 280 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:230)

rs_ID	r²[population]
rs10737788	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10754497	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10754499	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10754500	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10754501	0.92[EUR][1000 genomes]
rs10754502	0.92[EUR][1000 genomes]
rs10754503	0.92[EUR][1000 genomes]
rs10802348	0.82[MEX][hapmap]
rs10802358	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10802359	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10802361	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10802362	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10802364	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10802365	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10802369	1.00[CEU][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10802370	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10802371	0.92[EUR][1000 genomes]
rs10802373	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10802374	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10802375	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924539	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924554	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10924558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10924559	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10924560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10924564	0.83[MEX][hapmap]
rs10924565	0.83[EUR][1000 genomes]
rs10924570	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10924571	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924574	1.00[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10924575	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10924576	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10924577	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924579	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924580	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924581	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10924583	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924584	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924587	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924588	0.82[EUR][1000 genomes]
rs10924594	0.84[EUR][1000 genomes]
rs10924596	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10924597	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924598	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924611	0.83[MEX][hapmap]
rs10924612	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924613	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924615	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924617	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924618	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs10924619	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10924620	0.94[EUR][1000 genomes]
rs10924622	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924623	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924624	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924625	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10924632	0.92[EUR][1000 genomes]
rs10924633	0.92[EUR][1000 genomes]
rs10924634	0.92[EUR][1000 genomes]
rs10924635	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924639	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924641	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924643	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924644	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924650	0.83[EUR][1000 genomes]
rs10924651	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10924652	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924654	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924655	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1113269	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12024878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028902	0.85[EUR][1000 genomes]
rs12033048	0.86[MEX][hapmap];0.82[TSI][hapmap]
rs12034523	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12035348	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12036200	0.91[EUR][1000 genomes]
rs12039084	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12039123	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12039128	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12043382	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12043799	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057323	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12069738	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12081227	0.83[EUR][1000 genomes]
rs12084149	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12093226	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12116875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116946	0.82[EUR][1000 genomes]
rs12117700	0.92[EUR][1000 genomes]
rs12119839	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12120252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121062	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12122710	0.87[EUR][1000 genomes]
rs12124001	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12124946	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12126013	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12127161	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130070	0.83[MEX][hapmap]
rs12130852	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131333	0.87[EUR][1000 genomes]
rs12131455	0.86[EUR][1000 genomes]
rs12133404	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135212	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135713	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12136593	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12136871	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12138703	0.90[EUR][1000 genomes]
rs12138738	0.90[EUR][1000 genomes]
rs12140119	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12140567	1.00[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12140733	0.85[EUR][1000 genomes]
rs12142598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142601	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144287	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12144664	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12145702	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12401483	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12401510	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12401712	0.91[CHB][hapmap]
rs12402387	0.89[EUR][1000 genomes]
rs12402816	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12402817	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12403325	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12404014	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12405937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12406081	0.90[EUR][1000 genomes]
rs12406327	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407685	0.89[YRI][hapmap]
rs12409148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12411127	0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1361409	0.83[MEX][hapmap]
rs1578246	0.92[EUR][1000 genomes]
rs1578247	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1630253	0.83[MEX][hapmap]
rs1770011	0.83[MEX][hapmap]
rs1934538	0.92[EUR][1000 genomes]
rs2186066	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2333994	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2333995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2333997	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2333998	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2334001	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28536011	0.90[EUR][1000 genomes]
rs2878076	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2878078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878079	0.83[MEX][hapmap]
rs2878080	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35114899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845517	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4330890	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4347178	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4636424	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4654093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4654094	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654095	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654096	0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654097	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654218	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4654220	0.85[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4654221	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4654222	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654223	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654225	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4654228	0.81[AFR][1000 genomes]
rs4654245	0.84[YRI][hapmap]
rs4654248	0.84[YRI][hapmap]
rs4993796	0.82[EUR][1000 genomes]
rs4997394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5021683	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55731122	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55756416	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55886501	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55972545	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56149956	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56157160	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56277503	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56408886	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58471606	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58551401	0.83[EUR][1000 genomes]
rs58793014	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59056824	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59319374	0.90[EUR][1000 genomes]
rs59417715	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60410010	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60684295	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61285288	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6426288	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6657205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658146	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6658269	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6667269	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6667274	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6667580	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6669105	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6675598	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6679072	0.89[LWK][hapmap];0.91[YRI][hapmap]
rs6679225	0.91[EUR][1000 genomes]
rs6680347	1.00[YRI][hapmap]
rs6683143	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6683238	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6685894	0.90[EUR][1000 genomes]
rs6686262	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6688725	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6692072	0.84[YRI][hapmap]
rs6695050	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6695677	0.92[EUR][1000 genomes]
rs6696467	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6696588	0.92[EUR][1000 genomes]
rs6700636	0.92[EUR][1000 genomes]
rs72774441	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72774449	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72774458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72774461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72774472	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72774473	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72774475	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72774483	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72774484	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72774485	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72774488	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72776317	0.93[EUR][1000 genomes]
rs72776329	0.93[EUR][1000 genomes]
rs72776334	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7417739	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7531070	0.87[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7539358	0.83[MEX][hapmap]
rs9645318	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497871	chr1:245706209-246655353	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv534412	chr1:245747724-246655416	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003594	chr1:245801793-246649329	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1008786	chr1:245948622-246514454	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv535388	chr1:245948622-246514454	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1004119	chr1:245957145-246813150	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv535389	chr1:245957145-246813150	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1014529	chr1:245957145-246817877	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1000654	chr1:245966390-246778182	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv535392	chr1:245966390-246778182	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv868852	chr1:245969229-246811220	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
12	nsv948348	chr1:246090818-246853200	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv1007245	chr1:246120132-246619260	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv535395	chr1:246120132-246619260	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1001139	chr1:246120516-246548942	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv873409	chr1:246122871-246429058	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv430402	chr1:246124959-246787448	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv549524	chr1:246127777-246391677	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv497890	chr1:246143172-246778453	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
20	nsv1005310	chr1:246151590-246666101	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv1003239	chr1:246166737-246666101	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv535397	chr1:246166737-246666101	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
23	nsv998930	chr1:246166737-246702012	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv526469	chr1:246168017-246490438	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
25	nsv1005825	chr1:246174208-246688635	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	nsv873411	chr1:246188316-246429058	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv916235	chr1:246194535-246606790	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
28	nsv535398	chr1:246194546-246686301	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv1001462	chr1:246194546-246686358	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv535399	chr1:246194546-246686358	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
31	nsv949329	chr1:246220147-246710091	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
32	nsv873412	chr1:246257416-246576661	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
33	nsv995109	chr1:246260813-246429141	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
34	nsv997542	chr1:246265590-246556626	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
35	nsv1005067	chr1:246289451-246619260	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
36	nsv1012307	chr1:246289451-246655966	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	nsv535403	chr1:246289451-246655966	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
38	nsv468839	chr1:246303128-246708467	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv549528	chr1:246303128-246708467	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
40	nsv515510	chr1:246319482-246386134	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
41	nsv533962	chr1:246321447-246501692	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
42	nsv1001496	chr1:246339647-246595982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
43	nsv1011199	chr1:246342704-246464980	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
44	nsv1010307	chr1:246364256-246548942	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
45	nsv873413	chr1:246364811-246475061	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv947476	chr1:246369304-246389085	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	esv2764205	chr1:246369599-246384914	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv1006481	chr1:246371456-246429058	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
49	nsv1005573	chr1:246378676-246740427	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv535405	chr1:246378676-246740427	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:246340200-246384600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:246369200-246384000	Weak transcription	Aorta	Aorta
3	chr1:246374400-246384400	Weak transcription	Pancreas	Pancrea
4	chr1:246375800-246383400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:246379000-246383400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:246379000-246384400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:246379200-246383000	Weak transcription	Fetal Stomach	stomach
8	chr1:246379200-246383200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:246379200-246385400	Weak transcription	HUVEC	blood vessel
10	chr1:246379400-246383000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:246379400-246383000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:246380800-246386600	Weak transcription	Gastric	stomach
13	chr1:246381800-246383400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:246382000-246383200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:246382000-246383400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:246382000-246383400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:246382000-246383600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:246382200-246383400	Enhancers	Primary B cells from cord blood	blood
19	chr1:246382400-246383000	Enhancers	Fetal Muscle Leg	muscle
20	chr1:246382400-246383200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:246382400-246383400	Enhancers	Fetal Thymus	thymus
22	chr1:246382400-246383400	Flanking Active TSS	HepG2	liver
23	chr1:246382400-246383400	Enhancers	NHDF-Ad	bronchial
24	chr1:246382400-246383800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:246382400-246383800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:246382400-246385400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr1:246382600-246383000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr1:246382600-246383200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr1:246382600-246383200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:246382600-246383200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr1:246382600-246383200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr1:246382600-246383200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr1:246382600-246383200	Enhancers	Primary hematopoietic stem cells	blood
34	chr1:246382600-246383400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr1:246382600-246383400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr1:246382600-246383400	Enhancers	NH-A	brain
37	chr1:246382600-246383400	Enhancers	NHLF	lung
38	chr1:246382600-246383400	Enhancers	Osteobl	bone
39	chr1:246382600-246383800	Enhancers	Dnd41	blood
40	chr1:246382800-246383200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr1:246382800-246383200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr1:246382800-246383200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr1:246382800-246383400	Enhancers	Fetal Muscle Trunk	muscle

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