Variant report

Variant	rs67032345
Chromosome Location	chr11:25752073-25752074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:25751805-25752143	HepG2	liver:	n/a	n/a
2	MAFK	chr11:25751837-25752125	HepG2	liver:	n/a	n/a
3	MAFF	chr11:25751809-25752124	HepG2	liver:	n/a	n/a
4	MAFK	chr11:25751834-25752140	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000254456	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501021	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501022	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11823995	0.86[ASN][1000 genomes]
rs12289819	1.00[ASN][1000 genomes]
rs16914365	0.81[ASN][1000 genomes]
rs16914446	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55857930	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67443352	0.86[ASN][1000 genomes]
rs67547161	0.92[ASN][1000 genomes]
rs72877102	0.92[ASN][1000 genomes]
rs73435211	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759811	chr11:25564190-25842666	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv897132	chr11:25582331-25753192	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1044636	chr11:25633583-25764193	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2758259	chr11:25633803-25842666	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv428252	chr11:25633803-25842666	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv897137	chr11:25730008-25796742	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3479286	chr11:25750155-25753969	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3479297	chr11:25750155-25753969	Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv19729	chr11:25750530-25753590	Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
15	nsv553884	chr11:25750628-25752395	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	nsv553885	chr11:25750628-25753192	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	nsv553886	chr11:25750628-25753286	Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
18	nsv553887	chr11:25750628-25753430	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv1825232	chr11:25750628-25779039	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv553889	chr11:25750913-25753430	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv553890	chr11:25751078-25752395	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv553891	chr11:25751078-25752835	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
23	nsv553892	chr11:25751078-25753430	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
24	nsv553893	chr11:25751144-25753430	ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
25	nsv553894	chr11:25751503-25753430	Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links