Variant report
| Variant | rs6707608 |
|---|---|
| Chromosome Location | chr2:113707277-113707278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10496443 | 1.00[AMR][1000 genomes] |
| rs1143631 | 1.00[AMR][1000 genomes] |
| rs17042486 | 1.00[AMR][1000 genomes] |
| rs28928287 | 1.00[YRI][hapmap] |
| rs28928296 | 1.00[AMR][1000 genomes] |
| rs28938771 | 1.00[YRI][hapmap] |
| rs3783565 | 1.00[AMR][1000 genomes] |
| rs57986359 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6542111 | 1.00[AMR][1000 genomes] |
| rs6721020 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6722276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6726111 | 1.00[AMR][1000 genomes] |
| rs6748751 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72942424 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72942425 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72942429 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7556811 | 1.00[AMR][1000 genomes] |
| rs7556903 | 1.00[AMR][1000 genomes] |
| rs7590199 | 1.00[AMR][1000 genomes] |
| rs7590499 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532471 | chr2:113682449-113862981 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv997348 | chr2:113688093-113986508 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:113703000-113711400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
