Variant report

Variant	rs6726111
Chromosome Location	chr2:113672103-113672104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10496443	1.00[AMR][1000 genomes]
rs1143631	1.00[AMR][1000 genomes]
rs17042486	1.00[AMR][1000 genomes]
rs28928296	1.00[AMR][1000 genomes]
rs3783565	1.00[AMR][1000 genomes]
rs57986359	1.00[AMR][1000 genomes]
rs6542111	1.00[AMR][1000 genomes]
rs6707608	1.00[AMR][1000 genomes]
rs6721020	1.00[AMR][1000 genomes]
rs6722276	1.00[AMR][1000 genomes]
rs6748751	1.00[AMR][1000 genomes]
rs72942424	1.00[AMR][1000 genomes]
rs72942425	1.00[AMR][1000 genomes]
rs72942429	1.00[AMR][1000 genomes]
rs7556811	1.00[AMR][1000 genomes]
rs7556903	1.00[AMR][1000 genomes]
rs7590199	1.00[AMR][1000 genomes]
rs7590499	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003372	chr2:113670890-113682621	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113664800-113678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:113671600-113674400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:113671600-113674800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:113671600-113683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:113671800-113674600	Enhancers	Fetal Thymus	thymus
6	chr2:113671800-113675000	Enhancers	Thymus	Thymus
7	chr2:113672000-113672200	Enhancers	Spleen	Spleen
8	chr2:113672000-113674200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:113672000-113674600	Enhancers	Primary T helper naive cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links