Variant report

Variant	rs67186626
Chromosome Location	chr5:118616559-118616560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118603499..118605082-chr5:118615782..118618540,2	K562	blood:
2	chr5:118603582..118605779-chr5:118616439..118618624,3	K562	blood:
3	chr5:118615616..118617305-chr5:118617744..118619275,2	K562	blood:
4	chr5:118603726..118606822-chr5:118616119..118619037,3	MCF-7	breast:
5	chr5:118606692..118610066-chr5:118616114..118619938,5	K562	blood:

Variant related genes	Relation type
ENSG00000145779	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10519575	0.97[EUR][1000 genomes]
rs10519576	0.97[EUR][1000 genomes]
rs10519581	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145135	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56319623	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58131651	0.88[EUR][1000 genomes]
rs60599743	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6879962	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892643	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892980	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786106	1.00[ASN][1000 genomes]
rs72786107	0.97[EUR][1000 genomes]
rs72786113	0.97[EUR][1000 genomes]
rs72786116	0.97[EUR][1000 genomes]
rs72786118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786120	1.00[ASN][1000 genomes]
rs72786122	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786125	0.85[EUR][1000 genomes]
rs73248971	0.95[EUR][1000 genomes]
rs73794107	0.97[EUR][1000 genomes]
rs73794110	0.97[EUR][1000 genomes]
rs7701688	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1024648	chr5:118608175-118678268	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv869828	chr5:118610548-118691190	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118605400-118621000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:118605600-118618200	Weak transcription	Fetal Stomach	stomach
3	chr5:118606200-118617600	Weak transcription	Fetal Lung	lung
4	chr5:118610400-118618200	Weak transcription	Left Ventricle	heart
5	chr5:118610400-118619600	Genic enhancers	Dnd41	blood
6	chr5:118610600-118619800	Weak transcription	Aorta	Aorta
7	chr5:118610600-118622600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:118610800-118626000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:118611200-118620400	Weak transcription	A549	lung
10	chr5:118611200-118621000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:118611200-118623200	Weak transcription	Fetal Intestine Small	intestine
12	chr5:118611200-118625200	Weak transcription	Right Atrium	heart
13	chr5:118611400-118617000	Enhancers	Thymus	Thymus
14	chr5:118611400-118620400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:118611400-118621000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:118611400-118622600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:118611600-118621000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:118611800-118617800	Weak transcription	Adipose Nuclei	Adipose
19	chr5:118611800-118618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:118611800-118623200	Weak transcription	HUVEC	blood vessel
21	chr5:118612000-118618000	Weak transcription	Pancreas	Pancrea
22	chr5:118612000-118619600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr5:118612000-118622400	Weak transcription	Lung	lung
24	chr5:118612000-118625200	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:118612400-118619800	Weak transcription	Placenta	Placenta
26	chr5:118612600-118620800	Weak transcription	Stomach Mucosa	stomach
27	chr5:118613200-118623400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:118613800-118617000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr5:118613800-118617400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:118613800-118617800	Weak transcription	K562	blood
31	chr5:118613800-118626000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:118614000-118617400	Weak transcription	Hela-S3	cervix
33	chr5:118614000-118623400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:118614400-118616600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr5:118614400-118617000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr5:118614400-118617800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:118614400-118618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:118614400-118618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:118614400-118618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:118614400-118618200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr5:118614400-118618200	Weak transcription	NHEK	skin
42	chr5:118614400-118619200	Genic enhancers	Primary B cells from cord blood	blood
43	chr5:118614400-118620800	Weak transcription	Small Intestine	intestine
44	chr5:118614400-118623200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr5:118614600-118616800	Weak transcription	Fetal Heart	heart
46	chr5:118614600-118618200	Weak transcription	HMEC	breast
47	chr5:118614800-118617600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr5:118614800-118618000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr5:118615000-118617600	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr5:118615000-118618200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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