Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20286111..20289844-chr2:20290692..20292976,3	MCF-7	breast:
2	chr2:20285871..20288708-chr2:20290874..20293778,2	MCF-7	breast:
3	chr2:20285176..20288161-chr2:20293130..20295136,2	MCF-7	breast:
4	chr2:20250052..20253653-chr2:20284923..20290028,5	MCF-7	breast:
5	chr2:20287087..20289341-chr2:20424878..20426458,2	K562	blood:
6	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
7	chr2:20284419..20286045-chr2:20286888..20289126,2	MCF-7	breast:
8	chr2:20287240..20289975-chr2:20292126..20294060,2	K562	blood:
9	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
10	chr2:20278085..20279898-chr2:20286384..20289242,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10169811	0.90[EUR][1000 genomes]
rs10171384	0.90[EUR][1000 genomes]
rs10195803	0.90[EUR][1000 genomes]
rs10199614	0.90[EUR][1000 genomes]
rs10207632	0.90[EUR][1000 genomes]
rs10208355	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1028054	0.89[EUR][1000 genomes]
rs1028055	0.89[EUR][1000 genomes]
rs11096639	0.86[EUR][1000 genomes]
rs11900576	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12998930	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13391566	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55971461	0.89[EUR][1000 genomes]
rs6531203	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6531206	0.89[EUR][1000 genomes]
rs6531207	0.88[EUR][1000 genomes]
rs6749952	0.86[EUR][1000 genomes]
rs7556745	0.90[EUR][1000 genomes]
rs7558628	0.89[EUR][1000 genomes]
rs7561381	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7572608	0.89[EUR][1000 genomes]
rs7582437	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7583420	0.89[EUR][1000 genomes]
rs7609013	0.90[EUR][1000 genomes]
rs907864	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6719494	AC098828.2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282000-20288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20282200-20288400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:20282200-20289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:20282200-20289200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:20282200-20289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:20282400-20290000	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
10	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix
11	chr2:20286200-20288200	Weak transcription	HepG2	liver
12	chr2:20286200-20288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:20286200-20290400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:20286400-20288200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:20286600-20288000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:20286600-20290400	Weak transcription	HSMMtube	muscle
17	chr2:20286800-20290400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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