Variant report

Variant	rs10195803
Chromosome Location	chr2:20291041-20291042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20268478..20271036-chr2:20289525..20291447,2	MCF-7	breast:
2	chr2:20248110..20258329-chr2:20290320..20297278,22	MCF-7	breast:
3	chr2:20285871..20288708-chr2:20290874..20293778,2	MCF-7	breast:
4	chr2:20289699..20292359-chr2:20294103..20297412,3	MCF-7	breast:
5	chr2:20249442..20252213-chr2:20288263..20291117,3	K562	blood:
6	chr2:20276734..20283198-chr2:20287354..20293786,7	MCF-7	breast:
7	chr2:20263940..20267235-chr2:20290862..20294236,4	MCF-7	breast:
8	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
9	chr2:20286111..20289844-chr2:20290692..20292976,3	MCF-7	breast:
10	chr2:20277155..20282170-chr2:20290246..20293600,5	MCF-7	breast:
11	chr2:20290689..20292864-chr2:20300791..20304475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10169811	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10171384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199614	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10207632	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10208355	0.95[CEU][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs1028054	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1028055	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11096639	0.95[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs11673841	0.84[EUR][1000 genomes]
rs11677683	0.83[EUR][1000 genomes]
rs11677734	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs11679737	0.86[CEU][hapmap];0.82[CHD][hapmap]
rs11682837	0.84[EUR][1000 genomes]
rs11685443	0.86[CEU][hapmap]
rs11685788	1.00[CEU][hapmap]
rs11689490	0.95[CEU][hapmap];0.90[CHD][hapmap];0.84[EUR][1000 genomes]
rs11690530	0.90[CEU][hapmap]
rs11692546	0.90[CEU][hapmap]
rs11900576	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs12998930	0.87[EUR][1000 genomes]
rs13005386	0.90[CEU][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs13391566	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs1554007	0.81[CEU][hapmap]
rs34694787	0.85[EUR][1000 genomes]
rs55971461	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62112180	0.84[EUR][1000 genomes]
rs6531203	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs6531204	0.95[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs6531205	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs6531206	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6531207	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6708655	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs6709349	0.95[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[EUR][1000 genomes]
rs6719494	0.90[EUR][1000 genomes]
rs6749952	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7556745	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7558628	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7561381	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs7572608	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7582437	0.95[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs7583420	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7609013	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs878983	0.85[CEU][hapmap];0.87[CHD][hapmap]
rs907864	0.95[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10195803	AC098828.2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20288800-20291400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:20288800-20293200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:20288800-20293200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:20289200-20293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:20289600-20291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:20289800-20293400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:20290000-20291400	Enhancers	Fetal Muscle Trunk	muscle
9	chr2:20290000-20291800	Enhancers	Fetal Muscle Leg	muscle
10	chr2:20290000-20291800	Enhancers	Ovary	ovary
11	chr2:20290000-20293000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:20290000-20294400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:20290200-20291200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:20290200-20291400	Weak transcription	Psoas Muscle	Psoas
15	chr2:20290400-20291200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:20290400-20291200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:20290400-20294000	Enhancers	Placenta	Placenta
18	chr2:20290400-20295400	Enhancers	HMEC	breast
19	chr2:20290600-20291200	Enhancers	Hela-S3	cervix
20	chr2:20290600-20291200	Enhancers	HepG2	liver
21	chr2:20290600-20291400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:20290600-20292400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:20290600-20293600	Enhancers	Adipose Nuclei	Adipose
24	chr2:20290600-20294000	Enhancers	Fetal Heart	heart
25	chr2:20290600-20294400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:20290800-20291200	Enhancers	Colon Smooth Muscle	Colon
27	chr2:20290800-20291200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr2:20290800-20291200	Flanking Active TSS	HSMMtube	muscle
29	chr2:20290800-20291400	Enhancers	Fetal Intestine Small	intestine
30	chr2:20290800-20291400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr2:20290800-20291600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:20290800-20291600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr2:20290800-20291600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr2:20290800-20291600	Flanking Active TSS	HSMM	muscle
35	chr2:20290800-20291600	Flanking Active TSS	K562	blood
36	chr2:20290800-20291800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:20290800-20291800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr2:20290800-20291800	Enhancers	Fetal Kidney	kidney
39	chr2:20290800-20291800	Enhancers	Fetal Lung	lung
40	chr2:20290800-20291800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr2:20290800-20291800	Flanking Active TSS	Osteobl	bone
42	chr2:20290800-20292000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:20290800-20292000	Flanking Active TSS	NHDF-Ad	bronchial
44	chr2:20290800-20292200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:20290800-20292200	Enhancers	Left Ventricle	heart
46	chr2:20290800-20292200	Enhancers	Rectal Smooth Muscle	rectum
47	chr2:20290800-20294200	Enhancers	Esophagus	oesophagus
48	chr2:20290800-20294200	Enhancers	Fetal Stomach	stomach
49	chr2:20290800-20294400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr2:20290800-20294400	Enhancers	NH-A	brain

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