Variant report

Variant	rs1554007
Chromosome Location	chr2:20279774-20279775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10169811	0.81[CEU][hapmap]
rs10195803	0.81[CEU][hapmap]
rs1028055	0.81[CEU][hapmap]
rs11673841	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11679737	0.82[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs11682837	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11685443	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11689490	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690530	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs11692546	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs62112180	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531204	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6531205	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6708655	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6709349	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6749952	0.82[EUR][1000 genomes]
rs7558628	0.81[CEU][hapmap]
rs878983	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
3	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:20274600-20280600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:20275000-20280000	Weak transcription	K562	blood
6	chr2:20275000-20280200	Weak transcription	Ovary	ovary
7	chr2:20275000-20280200	Weak transcription	Pancreas	Pancrea
8	chr2:20275000-20280400	Weak transcription	Spleen	Spleen
9	chr2:20275200-20280600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:20277400-20282400	Enhancers	Placenta	Placenta
11	chr2:20278000-20280200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:20279000-20280600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:20279600-20281400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:20279600-20282000	Enhancers	Fetal Muscle Trunk	muscle
15	chr2:20279600-20282200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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