Variant report

Variant	rs62112180
Chromosome Location	chr2:20283443-20283444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20248757..20252967-chr2:20277280..20285105,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10169811	0.84[EUR][1000 genomes]
rs10171384	0.84[EUR][1000 genomes]
rs10195803	0.84[EUR][1000 genomes]
rs10199614	0.84[EUR][1000 genomes]
rs10207632	0.84[EUR][1000 genomes]
rs1028054	0.83[EUR][1000 genomes]
rs1028055	0.83[EUR][1000 genomes]
rs11673841	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11675411	0.91[AFR][1000 genomes]
rs11679737	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11682837	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11685443	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11689490	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11690530	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11692546	0.89[EUR][1000 genomes]
rs1554007	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55971461	0.83[EUR][1000 genomes]
rs6531204	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531205	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531206	0.83[EUR][1000 genomes]
rs6531207	0.82[EUR][1000 genomes]
rs6708655	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6709349	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6749952	0.86[EUR][1000 genomes]
rs7556745	0.84[EUR][1000 genomes]
rs7558628	0.83[EUR][1000 genomes]
rs7572608	0.83[EUR][1000 genomes]
rs7583420	0.83[EUR][1000 genomes]
rs7609013	0.84[EUR][1000 genomes]
rs878983	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20280800-20291000	Weak transcription	A549	lung
2	chr2:20281200-20291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:20282000-20288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20282200-20283600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:20282200-20285400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:20282200-20286000	Weak transcription	HSMMtube	muscle
7	chr2:20282200-20288400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:20282200-20289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:20282200-20289200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:20282200-20289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:20282400-20283600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:20282400-20290000	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:20282400-20290400	Weak transcription	Placenta	Placenta
14	chr2:20282800-20290600	Weak transcription	Hela-S3	cervix

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