Variant report

Variant	rs6531205
Chromosome Location	chr2:20297416-20297417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20072609..20074273-chr2:20296535..20298173,2	K562	blood:
2	chr2:20100345..20103243-chr2:20296732..20299128,2	MCF-7	breast:
3	chr2:20154421..20157278-chr2:20295987..20298973,3	MCF-7	breast:
4	chr2:20251166..20253284-chr2:20295543..20298394,2	K562	blood:
5	chr2:20154448..20157008-chr2:20296736..20298879,2	MCF-7	breast:
6	chr2:20296833..20299152-chr2:20423659..20425384,3	MCF-7	breast:
7	chr2:20210274..20217508-chr2:20292118..20299922,13	MCF-7	breast:
8	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
9	chr2:20280896..20282415-chr2:20296609..20299521,2	K562	blood:
10	chr2:20213367..20215755-chr2:20296083..20298973,4	MCF-7	breast:
11	chr2:20247984..20253637-chr2:20287496..20297716,23	MCF-7	breast:
12	chr2:20295420..20298254-chr2:20423828..20425433,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000132031	Chromatin interaction
ENSG00000271991	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000115884	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000183891	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10169811	0.95[CEU][hapmap];0.80[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10171384	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10195803	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10199614	0.91[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10200946	0.85[YRI][hapmap]
rs10207632	0.85[EUR][1000 genomes]
rs10208355	0.91[CEU][hapmap]
rs1028054	0.91[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1028055	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11096639	0.91[CEU][hapmap]
rs11673841	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11677734	0.82[CEU][hapmap]
rs11679737	0.90[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes]
rs11682837	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11685443	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11685788	0.91[CEU][hapmap]
rs11689490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690530	0.95[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs11692546	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs11900576	0.87[CEU][hapmap]
rs13005386	0.86[CEU][hapmap]
rs13391566	0.87[CEU][hapmap]
rs1554007	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34367401	0.81[EUR][1000 genomes]
rs34481015	0.82[EUR][1000 genomes]
rs55971461	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62112180	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531203	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs6531204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531206	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6531207	0.91[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6708655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6709349	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6749952	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7556745	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs7558628	0.95[CEU][hapmap];0.80[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7561381	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs7572608	0.91[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7582437	0.91[CEU][hapmap]
rs7583420	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs7609013	0.91[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs878983	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs907864	0.91[CEU][hapmap]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20291000-20300000	Weak transcription	Right Atrium	heart
2	chr2:20291600-20297800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:20292000-20300400	Weak transcription	HUVEC	blood vessel
4	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
5	chr2:20294000-20297600	Weak transcription	Ovary	ovary
6	chr2:20294000-20297800	Weak transcription	Placenta	Placenta
7	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
8	chr2:20294200-20297600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:20294200-20297600	Weak transcription	Esophagus	oesophagus
10	chr2:20294200-20297600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:20294200-20297600	Weak transcription	Hela-S3	cervix
12	chr2:20294200-20297600	Weak transcription	HSMM	muscle
13	chr2:20294200-20297600	Weak transcription	NHDF-Ad	bronchial
14	chr2:20294200-20297800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:20294400-20297600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:20294400-20297600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:20294400-20297600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:20294400-20297600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:20294400-20297800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:20294400-20297800	Weak transcription	NH-A	brain
21	chr2:20294400-20300200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:20294600-20297600	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:20294800-20297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:20295200-20297600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:20295200-20297600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:20295200-20297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:20295200-20297600	Weak transcription	NHLF	lung
28	chr2:20295200-20297800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:20295200-20297800	Weak transcription	NHEK	skin
30	chr2:20295400-20297600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:20295400-20297600	Weak transcription	HMEC	breast
32	chr2:20295600-20297800	Weak transcription	Liver	Liver
33	chr2:20295800-20297600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:20297400-20297800	Enhancers	A549	lung
35	chr2:20297400-20297800	Enhancers	HepG2	liver
36	chr2:20297400-20298000	Enhancers	HSMMtube	muscle
37	chr2:20297400-20298400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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