Variant report

Variant	rs7582437
Chromosome Location	chr2:20301461-20301462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20269865..20272049-chr2:20300977..20303518,3	MCF-7	breast:
2	chr2:20146475..20148422-chr2:20299562..20301684,2	K562	blood:
3	chr2:20299695..20307724-chr2:20421846..20426859,15	MCF-7	breast:
4	chr2:20301244..20303124-chr2:20419816..20421979,2	MCF-7	breast:
5	chr2:20250364..20252626-chr2:20300764..20304294,3	MCF-7	breast:
6	chr2:20300369..20303595-chr2:20430836..20433984,3	MCF-7	breast:
7	chr2:20290689..20292864-chr2:20300791..20304475,3	K562	blood:

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10169811	0.95[CEU][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs10171384	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10195803	0.95[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs10199614	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10207632	0.88[EUR][1000 genomes]
rs10208355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1028054	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1028055	0.95[CEU][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs11096639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11677734	0.86[CEU][hapmap]
rs11679737	0.81[CEU][hapmap]
rs11685443	0.82[CEU][hapmap]
rs11685788	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11689490	0.91[CEU][hapmap]
rs11690530	0.86[CEU][hapmap]
rs11692546	0.86[CEU][hapmap]
rs11900576	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12998930	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13005386	0.86[CEU][hapmap];0.80[CHD][hapmap]
rs13022175	0.94[YRI][hapmap]
rs13391566	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16987379	0.88[YRI][hapmap]
rs34481015	0.80[EUR][1000 genomes]
rs55971461	0.89[EUR][1000 genomes]
rs6531203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6531204	0.91[CEU][hapmap]
rs6531205	0.91[CEU][hapmap]
rs6531206	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6531207	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs66598678	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6708655	0.91[CEU][hapmap]
rs6709349	0.91[CEU][hapmap]
rs6719494	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6749952	0.88[EUR][1000 genomes]
rs7556745	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7558628	0.95[CEU][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs7561381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7572608	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7583420	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7609013	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs878983	0.85[CEU][hapmap]
rs907864	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7582437	AC098828.2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20293600-20304200	Weak transcription	Stomach Mucosa	stomach
2	chr2:20294000-20304400	Weak transcription	Pancreas	Pancrea
3	chr2:20298000-20303000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:20298400-20307800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:20299600-20301800	Enhancers	Placenta	Placenta
6	chr2:20300000-20303600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:20301200-20306400	Weak transcription	HUVEC	blood vessel

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