Variant report

Variant	rs11685443
Chromosome Location	chr2:20274446-20274447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20213655..20215850-chr2:20273111..20274656,2	MCF-7	breast:
2	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
3	chr2:20273188..20275135-chr2:20424139..20425783,2	MCF-7	breast:
4	chr2:20249788..20257046-chr2:20268868..20274735,23	MCF-7	breast:
5	chr2:20271820..20275999-chr2:20291191..20294413,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10169811	0.86[CEU][hapmap]
rs10171384	0.82[CEU][hapmap]
rs10195803	0.86[CEU][hapmap]
rs10199614	0.82[CEU][hapmap]
rs10208355	0.82[CEU][hapmap]
rs1028054	0.82[CEU][hapmap]
rs1028055	0.86[CEU][hapmap]
rs11096639	0.82[CEU][hapmap]
rs11673841	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11675411	0.81[AFR][1000 genomes]
rs11679737	0.81[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11682837	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11685788	0.82[CEU][hapmap]
rs11689490	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11690530	0.86[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11692546	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1554007	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62112180	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6531204	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6531205	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6531206	0.82[CEU][hapmap]
rs6531207	0.82[CEU][hapmap]
rs6708655	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6709349	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6749952	0.82[EUR][1000 genomes]
rs7558628	0.86[CEU][hapmap]
rs7572608	0.82[CEU][hapmap]
rs7582437	0.82[CEU][hapmap]
rs7583420	0.82[CEU][hapmap]
rs7609013	0.82[CEU][hapmap]
rs878983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs907864	0.82[CEU][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20267200-20275000	Enhancers	Placenta	Placenta
2	chr2:20270000-20275200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:20271000-20275000	Enhancers	Pancreas	Pancrea
4	chr2:20271200-20275000	Enhancers	Left Ventricle	heart
5	chr2:20272000-20280600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:20272200-20275000	Enhancers	Ovary	ovary
7	chr2:20272400-20275000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:20272400-20277200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:20272600-20275000	Enhancers	Right Atrium	heart
10	chr2:20272600-20275000	Enhancers	Right Ventricle	heart
11	chr2:20273000-20277000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:20273000-20279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:20273200-20281800	Weak transcription	Hela-S3	cervix
14	chr2:20273400-20274800	Weak transcription	NHDF-Ad	bronchial
15	chr2:20273800-20274600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:20273800-20275000	Enhancers	Spleen	Spleen
17	chr2:20274000-20275000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:20274200-20274600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:20274200-20274800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:20274200-20275800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:20274200-20276600	Weak transcription	Fetal Intestine Small	intestine
22	chr2:20274200-20281800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:20274400-20274600	Enhancers	Colon Smooth Muscle	Colon
24	chr2:20274400-20274600	Weak transcription	Lung	lung
25	chr2:20274400-20274600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr2:20274400-20275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:20274400-20275000	Enhancers	K562	blood
28	chr2:20274400-20275200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr2:20274400-20275200	Enhancers	Fetal Heart	heart
30	chr2:20274400-20278000	Enhancers	HepG2	liver

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