Variant report

Variant	rs6720781
Chromosome Location	chr2:74095347-74095348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74090246..74091943-chr2:74093946..74096176,2	MCF-7	breast:
2	chr2:74086563..74089474-chr2:74092374..74096143,3	K562	blood:

Variant related genes	Relation type
ENSG00000124356	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10169994	1.00[EUR][1000 genomes]
rs10192291	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11126418	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885982	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11888468	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11890343	0.94[EUR][1000 genomes]
rs11904306	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13384232	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs13402321	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13409194	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009399	1.00[CEU][hapmap]
rs55815836	1.00[EUR][1000 genomes]
rs56055081	0.97[EUR][1000 genomes]
rs59098607	0.83[EUR][1000 genomes]
rs7570391	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7596123	0.94[EUR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
2	chr2:74087600-74095800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:74088000-74100400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:74088200-74096000	Weak transcription	Fetal Brain Male	brain
5	chr2:74088200-74097000	Weak transcription	Fetal Heart	heart
6	chr2:74088200-74097200	Weak transcription	NHDF-Ad	bronchial
7	chr2:74089400-74095400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:74091600-74095600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:74091600-74097200	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:74091800-74095400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:74092000-74099400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:74092000-74100800	Weak transcription	Pancreas	Pancrea
13	chr2:74092000-74101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr2:74092600-74099400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:74092800-74097400	Weak transcription	Right Ventricle	heart
16	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
17	chr2:74093400-74102200	Weak transcription	Psoas Muscle	Psoas
18	chr2:74093600-74097200	Weak transcription	HMEC	breast
19	chr2:74093800-74097000	Weak transcription	Aorta	Aorta
20	chr2:74093800-74099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:74093800-74101800	Weak transcription	HepG2	liver
22	chr2:74094000-74095600	Weak transcription	Brain Germinal Matrix	brain
23	chr2:74094000-74095800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr2:74094000-74097200	Weak transcription	Esophagus	oesophagus
25	chr2:74094000-74097200	Weak transcription	Left Ventricle	heart
26	chr2:74094000-74097200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr2:74094000-74097800	Weak transcription	Spleen	Spleen
28	chr2:74094000-74100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:74094000-74102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:74094200-74095400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:74094200-74095800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr2:74094200-74095800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:74094200-74096000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:74094200-74096000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr2:74094200-74096000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:74094200-74096000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:74094200-74096400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr2:74094200-74097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:74094200-74097000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr2:74094200-74097000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:74094200-74097000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:74094200-74097000	Weak transcription	Fetal Brain Female	brain
43	chr2:74094200-74097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr2:74094200-74097000	Weak transcription	HSMMtube	muscle
45	chr2:74094200-74097000	Weak transcription	Osteobl	bone
46	chr2:74094200-74097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:74094200-74097200	Weak transcription	Adipose Nuclei	Adipose
48	chr2:74094200-74097200	Weak transcription	Brain Angular Gyrus	brain
49	chr2:74094200-74097200	Weak transcription	Fetal Lung	lung
50	chr2:74094200-74097200	Weak transcription	Fetal Muscle Leg	muscle

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