Variant report

Variant	rs7570391
Chromosome Location	chr2:74093833-74093834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74084294..74085854-chr2:74090928..74093869,2	K562	blood:
2	chr2:74087392..74089245-chr2:74092521..74094100,2	MCF-7	breast:
3	chr2:74086563..74089474-chr2:74092374..74096143,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DUSP11-4	chr2:74093783-74094204	NONHSAT071640

Variant related genes	Relation type
ENSG00000124356	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10169994	1.00[EUR][1000 genomes]
rs10192291	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11126418	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885982	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11888468	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11890343	0.94[EUR][1000 genomes]
rs11904306	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13384232	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs13402321	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13409194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009399	1.00[CEU][hapmap]
rs55815836	1.00[EUR][1000 genomes]
rs56055081	0.97[EUR][1000 genomes]
rs59098607	0.83[EUR][1000 genomes]
rs6720781	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7596123	0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7570391	STAMBP	cis	multi-tissue	Pritchard
rs7570391	STAMBP	cis	lymphoblastoid	seeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74065000-74094400	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:74065600-74094400	Strong transcription	Dnd41	blood
3	chr2:74066400-74094400	Strong transcription	Fetal Muscle Trunk	muscle
4	chr2:74066600-74094200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:74066600-74094400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:74066800-74094200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:74067000-74094200	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:74068600-74094200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr2:74068800-74094400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr2:74068800-74094400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr2:74070600-74094200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:74070800-74094200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr2:74070800-74094200	Strong transcription	Liver	Liver
14	chr2:74070800-74094400	Strong transcription	Placenta	Placenta
15	chr2:74070800-74094400	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr2:74071000-74094400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:74071200-74094200	Strong transcription	Adipose Nuclei	Adipose
18	chr2:74071200-74094200	Strong transcription	Fetal Brain Female	brain
19	chr2:74071200-74094200	Strong transcription	Fetal Thymus	thymus
20	chr2:74071200-74094400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr2:74071400-74094000	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr2:74071400-74094200	Strong transcription	Primary T cells from cord blood	blood
23	chr2:74071600-74094200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:74071600-74094200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr2:74071600-74094200	Strong transcription	Fetal Muscle Leg	muscle
26	chr2:74071600-74094200	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:74071600-74094200	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr2:74071600-74094600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:74071800-74094200	Strong transcription	Thymus	Thymus
30	chr2:74071800-74094400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:74072200-74094400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr2:74072200-74094400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:74072200-74094400	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr2:74076000-74094200	Strong transcription	Primary B cells from cord blood	blood
35	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
36	chr2:74078600-74094400	Strong transcription	Fetal Intestine Large	intestine
37	chr2:74079600-74094200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr2:74079800-74094200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr2:74079800-74094400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr2:74080800-74094200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:74084000-74094200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:74084000-74094600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr2:74084200-74094400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr2:74085600-74094400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr2:74085800-74094200	Strong transcription	Brain Anterior Caudate	brain
46	chr2:74086000-74094400	Strong transcription	Brain Hippocampus Middle	brain
47	chr2:74086200-74094200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:74086200-74094200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr2:74086400-74094000	Strong transcription	Left Ventricle	heart
50	chr2:74086400-74094200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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