Variant report

Variant	rs6721505
Chromosome Location	chr2:36578013-36578014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10167098	0.94[EUR][1000 genomes]
rs11124514	0.81[CEU][hapmap]
rs11124515	0.82[CEU][hapmap]
rs1159133	0.90[CEU][hapmap]
rs12465282	0.91[CEU][hapmap]
rs12465297	0.91[CEU][hapmap]
rs13394052	0.82[CEU][hapmap]
rs13407488	0.82[CEU][hapmap]
rs2113631	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2113632	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2161904	0.88[EUR][1000 genomes]
rs2888338	0.87[EUR][1000 genomes]
rs3770936	0.82[CEU][hapmap]
rs3770946	0.95[CEU][hapmap]
rs3770947	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs3770963	0.88[EUR][1000 genomes]
rs4233914	0.82[CEU][hapmap]
rs4670548	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4670554	0.82[CEU][hapmap]
rs6708545	0.90[EUR][1000 genomes]
rs6711707	0.90[CEU][hapmap];0.80[AMR][1000 genomes]
rs711255	1.00[CHB][hapmap]
rs7589917	0.91[CEU][hapmap]
rs848508	1.00[CHB][hapmap]
rs888076	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757792	chr2:36243452-36590658	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2759040	chr2:36243452-36590658	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36567200-36579200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:36574600-36579600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:36575600-36579800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:36576000-36578800	Weak transcription	NHLF	lung
5	chr2:36576200-36578800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:36576400-36578200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:36576400-36578600	Weak transcription	A549	lung
8	chr2:36577000-36578200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:36577200-36580800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr2:36577800-36579800	Weak transcription	Placenta	Placenta
11	chr2:36578000-36581200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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