Variant report

Variant	rs672911
Chromosome Location	chr7:112537215-112537216
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112186789..112189212-chr7:112536212..112538987,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10237980	0.81[ASN][1000 genomes]
rs10249952	1.00[CHB][hapmap]
rs10273589	1.00[JPT][hapmap]
rs10275208	1.00[CHB][hapmap]
rs1227163	1.00[JPT][hapmap]
rs1227171	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs1227174	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1227181	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1227190	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1238698	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs12535487	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12539085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1530756	1.00[CHB][hapmap]
rs1533851	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1547554	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17160078	1.00[CHB][hapmap]
rs1718944	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1718948	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1718961	0.87[EUR][1000 genomes]
rs1718967	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1796492	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1796493	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1796512	0.85[EUR][1000 genomes]
rs1796516	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1996843	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2396573	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2396574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2457	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs2687267	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2708295	0.85[EUR][1000 genomes]
rs2708296	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs3997335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3997336	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs494324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548994	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs549688	0.85[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs552304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs564494	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565641	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58858661	0.92[EUR][1000 genomes]
rs62472532	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6466421	1.00[JPT][hapmap]
rs660743	0.95[CEU][hapmap];0.85[JPT][hapmap]
rs685259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944843	1.00[CHB][hapmap]
rs6948575	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6953522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6967716	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs726593	0.82[JPT][hapmap]
rs7777973	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs7781871	1.00[CHB][hapmap]
rs7785774	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7803405	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7808616	1.00[CHB][hapmap]
rs821782	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs821783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs821785	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs821787	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9969347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2754368	chr7:112483049-112588049	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112468600-112550000	Weak transcription	Aorta	Aorta
2	chr7:112471800-112545200	Weak transcription	Ovary	ovary
3	chr7:112507400-112556800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:112515400-112551000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:112516000-112537800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:112516400-112551000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:112519000-112557400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:112522200-112571000	Weak transcription	Thymus	Thymus
9	chr7:112522400-112551000	Weak transcription	Spleen	Spleen
10	chr7:112522400-112558400	Weak transcription	Gastric	stomach
11	chr7:112522400-112558800	Weak transcription	Lung	lung
12	chr7:112524200-112539400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:112524200-112550800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:112524200-112556800	Weak transcription	Colonic Mucosa	Colon
15	chr7:112524800-112538600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:112527000-112538200	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:112527200-112546600	Weak transcription	Psoas Muscle	Psoas
18	chr7:112529600-112538600	Weak transcription	Brain Substantia Nigra	brain
19	chr7:112529800-112550800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:112530000-112539000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:112530200-112538600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:112530200-112545600	Weak transcription	Brain Anterior Caudate	brain
23	chr7:112530200-112547000	Weak transcription	Small Intestine	intestine
24	chr7:112530200-112551000	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:112530400-112538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:112530400-112538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:112530400-112538400	Weak transcription	Liver	Liver
28	chr7:112530400-112538600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:112530400-112539800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:112530400-112541200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:112530400-112576600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:112531000-112538200	Weak transcription	Right Ventricle	heart
33	chr7:112531200-112538600	Weak transcription	Stomach Mucosa	stomach
34	chr7:112532400-112550800	Weak transcription	NHDF-Ad	bronchial
35	chr7:112533400-112541200	Weak transcription	NH-A	brain
36	chr7:112533600-112538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr7:112533600-112541200	Weak transcription	Brain Germinal Matrix	brain
38	chr7:112533600-112545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:112533800-112538400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:112533800-112545000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:112534000-112540000	Weak transcription	GM12878-XiMat	blood
42	chr7:112534200-112551000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:112534400-112541000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:112534400-112551000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:112534600-112539600	Weak transcription	Fetal Brain Female	brain
46	chr7:112534600-112545000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:112534600-112545400	Weak transcription	Primary T cells from cord blood	blood
48	chr7:112534600-112551000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:112534800-112538000	Weak transcription	Fetal Intestine Small	intestine
50	chr7:112534800-112538200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links