Variant report

Variant	rs1227181
Chromosome Location	chr7:112389363-112389364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112385688..112389591-chr7:112393476..112396068,3	K562	blood:
2	chr7:112388151..112390737-chr7:112429139..112430803,2	MCF-7	breast:
3	chr7:112388518..112390786-chr7:112399104..112401435,2	K562	blood:
4	chr7:112384486..112386062-chr7:112388133..112390075,2	MCF-7	breast:
5	chr7:112385963..112387919-chr7:112389216..112391592,2	K562	blood:
6	chr7:112384010..112386200-chr7:112388223..112390275,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146802	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10216223	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10238492	0.82[CHB][hapmap]
rs10247759	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10249701	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10269793	0.95[ASN][1000 genomes]
rs10271752	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10273589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10275208	0.82[CHB][hapmap]
rs10280638	0.86[EUR][1000 genomes]
rs1227155	0.95[ASN][1000 genomes]
rs1227158	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1227159	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1227163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1227168	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1227171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1227172	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1227174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1227176	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1227177	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1227178	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1227183	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1227190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1238698	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12539085	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1530756	0.82[CHB][hapmap]
rs1547554	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1615468	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17160078	0.82[CHB][hapmap]
rs1718944	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs1718955	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1718957	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1718967	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1718969	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1796491	0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1796492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1796493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1796516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1922907	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1996843	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2396570	0.82[CHB][hapmap]
rs2396574	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2687267	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2708296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs3957315	0.82[CHB][hapmap]
rs3997335	1.00[JPT][hapmap]
rs494324	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs549688	0.85[JPT][hapmap]
rs552304	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs564494	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6466421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs660743	0.90[CEU][hapmap];0.85[JPT][hapmap]
rs672911	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs685259	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6944843	0.82[CHB][hapmap]
rs6945635	0.84[EUR][1000 genomes]
rs6946335	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6948575	0.95[CEU][hapmap]
rs6948876	0.95[ASN][1000 genomes]
rs6953522	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6955834	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6970266	0.84[EUR][1000 genomes]
rs726593	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7777973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7778135	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7781871	0.82[CHB][hapmap]
rs7789772	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7803405	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806781	1.00[CHB][hapmap]
rs7808616	0.82[CHB][hapmap]
rs821783	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs821785	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs821787	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9649356	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9655816	0.82[EUR][1000 genomes]
rs9969347	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
2	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:112388200-112389400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:112388200-112389400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:112388600-112389400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:112389000-112405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:112389000-112422800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:112389200-112412800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links