Variant report

Variant	rs6945635
Chromosome Location	chr7:112339251-112339252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10215501	0.97[ASN][1000 genomes]
rs10216223	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10216230	0.97[ASN][1000 genomes]
rs10233896	0.82[ASN][1000 genomes]
rs10234058	0.91[ASN][1000 genomes]
rs10242871	0.97[ASN][1000 genomes]
rs10247759	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249701	0.84[EUR][1000 genomes]
rs10253054	0.85[ASN][1000 genomes]
rs10261844	0.85[ASN][1000 genomes]
rs10265582	0.88[ASN][1000 genomes]
rs10271752	0.81[EUR][1000 genomes]
rs10273060	0.94[ASN][1000 genomes]
rs10280638	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280916	0.82[ASN][1000 genomes]
rs10953717	0.82[ASN][1000 genomes]
rs1227158	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1227168	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1227171	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1227172	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227174	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227176	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1227177	0.85[EUR][1000 genomes]
rs1227178	0.85[EUR][1000 genomes]
rs1227181	0.84[EUR][1000 genomes]
rs1227183	0.80[EUR][1000 genomes]
rs1227190	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1238698	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1614000	0.88[ASN][1000 genomes]
rs1615468	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1718955	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1718957	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1718969	0.84[EUR][1000 genomes]
rs1796491	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1796492	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1796493	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1796516	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1922907	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028028	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2457	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2905274	0.91[ASN][1000 genomes]
rs4490768	0.88[ASN][1000 genomes]
rs56113805	0.97[ASN][1000 genomes]
rs56376790	0.85[ASN][1000 genomes]
rs62475004	0.85[ASN][1000 genomes]
rs6466419	0.94[ASN][1000 genomes]
rs6466421	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6946335	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6950318	0.83[ASN][1000 genomes]
rs6955834	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6970266	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726593	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777973	0.84[EUR][1000 genomes]
rs7778135	0.84[EUR][1000 genomes]
rs7789772	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7803405	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9649356	0.85[EUR][1000 genomes]
rs9655816	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112338200-112339400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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