Variant report

Variant	rs10261844
Chromosome Location	chr7:112349802-112349803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112089530..112091873-chr7:112349129..112351036,2	K562	blood:
2	chr7:112347421..112349959-chr7:112428528..112430366,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10215501	0.88[ASN][1000 genomes]
rs10216223	0.88[ASN][1000 genomes]
rs10216230	0.88[ASN][1000 genomes]
rs10228483	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10233896	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10234058	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10238492	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10242871	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10243834	0.81[AFR][1000 genomes]
rs10247759	0.88[ASN][1000 genomes]
rs10250630	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10253054	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10269793	0.85[EUR][1000 genomes]
rs10273060	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10273589	0.85[EUR][1000 genomes]
rs10280638	0.85[ASN][1000 genomes]
rs10280916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953717	0.86[EUR][1000 genomes]
rs11538991	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11760733	0.80[EUR][1000 genomes]
rs11761491	0.87[AMR][1000 genomes]
rs11762442	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11770088	0.81[AMR][1000 genomes]
rs1227155	0.85[EUR][1000 genomes]
rs1227163	0.85[EUR][1000 genomes]
rs1614000	0.86[EUR][1000 genomes]
rs1922907	0.85[ASN][1000 genomes]
rs1989834	0.83[AMR][1000 genomes]
rs2905274	0.88[EUR][1000 genomes]
rs3734956	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56113805	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56376790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466419	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6945635	0.85[ASN][1000 genomes]
rs6948876	0.85[EUR][1000 genomes]
rs6970266	0.85[ASN][1000 genomes]
rs726593	0.88[ASN][1000 genomes]
rs7780098	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112349600-112351400	Enhancers	Fetal Heart	heart
2	chr7:112349800-112350200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:112349800-112351000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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