Variant report

Variant	rs7780098
Chromosome Location	chr7:112393592-112393593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112385688..112389591-chr7:112393476..112396068,3	K562	blood:
2	chr7:112391861..112394244-chr7:112394255..112396148,3	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10215501	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10216223	0.83[ASN][1000 genomes]
rs10216230	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10226382	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10228483	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10233896	0.80[EUR][1000 genomes]
rs10234058	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10238492	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10242871	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10247759	0.83[ASN][1000 genomes]
rs10249952	1.00[JPT][hapmap]
rs10250630	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10253054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10256800	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10257210	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10261844	0.86[EUR][1000 genomes]
rs10265582	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10269793	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10273060	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10273589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs10275208	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10280638	0.85[ASN][1000 genomes]
rs10280916	0.87[EUR][1000 genomes]
rs1044262	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10953717	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11538991	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11760733	0.85[ASN][1000 genomes]
rs11762442	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11762737	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11768787	1.00[JPT][hapmap]
rs1227155	0.99[EUR][1000 genomes]
rs1227163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes]
rs1227171	1.00[CHB][hapmap]
rs1227174	1.00[CHB][hapmap]
rs1227181	1.00[CHB][hapmap]
rs1227190	1.00[CHB][hapmap]
rs1238698	1.00[CHB][hapmap]
rs12539085	0.82[CHB][hapmap]
rs1530756	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1547554	0.82[CHB][hapmap]
rs1614000	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1615468	0.91[ASN][1000 genomes]
rs17160078	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1718967	0.82[CHB][hapmap]
rs17405723	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1796491	0.82[CHB][hapmap]
rs1796492	1.00[CHB][hapmap]
rs1796493	1.00[CHB][hapmap]
rs1796516	1.00[CHB][hapmap]
rs1992988	1.00[JPT][hapmap]
rs1996843	0.82[CHB][hapmap]
rs2396570	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2396574	0.82[CHB][hapmap]
rs2457	1.00[CHB][hapmap]
rs2687267	0.82[CHB][hapmap]
rs2708296	1.00[CHB][hapmap]
rs28681358	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2905274	0.86[EUR][1000 genomes]
rs3734956	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3957315	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4490768	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs494324	0.82[CHB][hapmap]
rs552304	0.82[CHB][hapmap]
rs56113805	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56376790	0.86[EUR][1000 genomes]
rs564494	0.82[CHB][hapmap]
rs6466419	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6466421	1.00[CHB][hapmap]
rs685259	0.82[CHB][hapmap]
rs6944843	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6946335	0.91[ASN][1000 genomes]
rs6948876	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6950318	0.91[ASN][1000 genomes]
rs6953522	0.82[CHB][hapmap]
rs726593	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7777973	1.00[CHB][hapmap]
rs7781871	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7803405	1.00[CHB][hapmap]
rs7806781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7808616	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs821783	0.82[CHB][hapmap]
rs821785	0.82[CHB][hapmap]
rs821787	0.82[CHB][hapmap]
rs9655816	0.91[ASN][1000 genomes]
rs9969347	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
2	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:112389000-112405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:112389000-112422800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:112389200-112412800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:112390200-112422800	Weak transcription	Thymus	Thymus
7	chr7:112391600-112418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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