Variant report

Variant	rs2905274
Chromosome Location	chr7:112331796-112331797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10215501	0.88[ASN][1000 genomes]
rs10216223	0.88[ASN][1000 genomes]
rs10216230	0.88[ASN][1000 genomes]
rs10228483	0.85[EUR][1000 genomes]
rs10233896	0.92[EUR][1000 genomes]
rs10234058	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238492	0.94[CHD][hapmap];0.83[TSI][hapmap]
rs10242871	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10247759	0.88[ASN][1000 genomes]
rs10250630	0.82[EUR][1000 genomes]
rs10253054	0.82[EUR][1000 genomes]
rs10261844	0.88[EUR][1000 genomes]
rs10265582	0.80[ASN][1000 genomes]
rs10269793	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10273060	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10273589	0.82[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10280638	0.86[ASN][1000 genomes]
rs10280916	0.87[EUR][1000 genomes]
rs10953717	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11538991	0.80[EUR][1000 genomes]
rs11768787	0.87[CHD][hapmap]
rs1227155	0.87[EUR][1000 genomes]
rs1227163	0.87[EUR][1000 genomes]
rs1614000	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1922907	0.91[ASN][1000 genomes]
rs2028028	0.91[ASN][1000 genomes]
rs2396570	0.94[CHD][hapmap]
rs3734956	0.85[EUR][1000 genomes]
rs3957315	0.88[CHD][hapmap];0.83[TSI][hapmap]
rs4490768	0.80[ASN][1000 genomes]
rs56113805	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56376790	0.88[EUR][1000 genomes]
rs62475004	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6466419	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6945635	0.91[ASN][1000 genomes]
rs6948876	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6970266	0.91[ASN][1000 genomes]
rs726593	0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs7780098	0.86[EUR][1000 genomes]
rs7781871	0.87[CHD][hapmap]
rs7806781	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2905274	TES	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112330200-112332400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:112330600-112332000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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