Variant report

Variant	rs10233896
Chromosome Location	chr7:112328669-112328670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10228483	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10232659	0.82[ASN][1000 genomes]
rs10234058	0.85[EUR][1000 genomes]
rs10238492	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10242871	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10249203	0.82[ASN][1000 genomes]
rs10250630	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10253054	0.83[EUR][1000 genomes]
rs10261844	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10273060	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10278994	0.82[ASN][1000 genomes]
rs10280916	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10953717	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11538991	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11761491	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11762442	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1614000	0.81[EUR][1000 genomes]
rs1922907	0.82[ASN][1000 genomes]
rs1989834	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1989835	0.82[ASN][1000 genomes]
rs2905274	0.92[EUR][1000 genomes]
rs3734956	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4582492	0.82[ASN][1000 genomes]
rs56113805	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56376790	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62475002	0.82[ASN][1000 genomes]
rs62475004	0.85[EUR][1000 genomes]
rs6466419	0.81[EUR][1000 genomes]
rs6945635	0.82[ASN][1000 genomes]
rs6970266	0.82[ASN][1000 genomes]
rs73436435	0.82[ASN][1000 genomes]
rs756868	0.82[ASN][1000 genomes]
rs756869	0.82[ASN][1000 genomes]
rs7780098	0.80[EUR][1000 genomes]
rs7796920	0.82[ASN][1000 genomes]
rs7804823	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112327400-112329000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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