Variant report

Variant	rs10242871
Chromosome Location	chr7:112340258-112340259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215501	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10216223	0.94[ASN][1000 genomes]
rs10216230	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10228483	0.84[EUR][1000 genomes]
rs10233896	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10234058	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10247759	0.94[ASN][1000 genomes]
rs10250630	0.81[EUR][1000 genomes]
rs10253054	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10256800	0.81[AMR][1000 genomes]
rs10261844	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10265582	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10269793	0.95[EUR][1000 genomes]
rs10273060	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10273589	0.95[EUR][1000 genomes]
rs10280638	0.91[ASN][1000 genomes]
rs10280916	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953717	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11762442	0.88[EUR][1000 genomes]
rs1227155	0.95[EUR][1000 genomes]
rs1227163	0.95[EUR][1000 genomes]
rs1614000	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1615468	0.85[ASN][1000 genomes]
rs1922907	0.97[ASN][1000 genomes]
rs2028028	0.80[ASN][1000 genomes]
rs2905274	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3734956	0.84[EUR][1000 genomes]
rs4490768	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56113805	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376790	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62475004	0.82[ASN][1000 genomes]
rs6466419	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6945635	0.97[ASN][1000 genomes]
rs6946335	0.85[ASN][1000 genomes]
rs6948876	0.95[EUR][1000 genomes]
rs6950318	0.85[ASN][1000 genomes]
rs6970266	0.97[ASN][1000 genomes]
rs726593	0.94[ASN][1000 genomes]
rs7780098	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112339400-112342200	Enhancers	Stomach Mucosa	stomach
2	chr7:112339600-112340800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:112339600-112342400	Enhancers	Fetal Intestine Large	intestine
4	chr7:112339800-112342400	Enhancers	Duodenum Mucosa	Duodenum
5	chr7:112340000-112342400	Enhancers	Fetal Intestine Small	intestine
6	chr7:112340200-112341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:112340200-112342200	Enhancers	Rectal Mucosa Donor 31	rectum

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