Variant report

Variant	rs10280916
Chromosome Location	chr7:112366655-112366656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112362677..112365383-chr7:112366545..112369067,2	K562	blood:
2	chr7:112365924..112367819-chr7:112368351..112371241,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10215501	0.85[ASN][1000 genomes]
rs10216223	0.85[ASN][1000 genomes]
rs10216230	0.85[ASN][1000 genomes]
rs10228483	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10233896	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10234058	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10238492	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10242871	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10243834	0.81[AFR][1000 genomes]
rs10247759	0.85[ASN][1000 genomes]
rs10249952	1.00[JPT][hapmap]
rs10250630	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10253054	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10261844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10265582	0.82[ASN][1000 genomes]
rs10269793	0.86[EUR][1000 genomes]
rs10273060	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10273589	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs10275208	1.00[JPT][hapmap]
rs10280638	0.88[ASN][1000 genomes]
rs1044262	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10953717	0.85[EUR][1000 genomes]
rs11538991	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11760733	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11761491	0.87[AMR][1000 genomes]
rs11762442	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11762737	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11768787	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs11770088	0.81[AMR][1000 genomes]
rs11770706	0.82[CHB][hapmap]
rs1227155	0.86[EUR][1000 genomes]
rs1227163	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs1227174	0.82[CHB][hapmap]
rs1227181	0.82[CHB][hapmap]
rs1227190	0.82[CHB][hapmap]
rs1238698	0.82[CHB][hapmap]
rs1530756	1.00[JPT][hapmap]
rs1614000	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1615468	0.82[ASN][1000 genomes]
rs17405723	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1796492	0.82[CHB][hapmap]
rs1796493	0.82[CHB][hapmap]
rs1796516	0.82[CHB][hapmap]
rs1922907	0.82[ASN][1000 genomes]
rs1989834	0.83[AMR][1000 genomes]
rs2285541	0.82[CHB][hapmap]
rs2396570	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2457	0.82[CHB][hapmap]
rs2708296	0.82[CHB][hapmap]
rs2905274	0.87[EUR][1000 genomes]
rs3734956	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3957315	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4478510	0.82[CHB][hapmap]
rs4490768	0.82[ASN][1000 genomes]
rs56113805	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56376790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6466419	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466421	0.82[CHB][hapmap]
rs6944843	1.00[JPT][hapmap]
rs6945635	0.82[ASN][1000 genomes]
rs6946335	0.82[ASN][1000 genomes]
rs6948876	0.86[EUR][1000 genomes]
rs6950318	0.82[ASN][1000 genomes]
rs6970266	0.82[ASN][1000 genomes]
rs726593	0.85[ASN][1000 genomes]
rs7777973	0.82[CHB][hapmap]
rs7780098	0.87[EUR][1000 genomes]
rs7781871	1.00[JPT][hapmap]
rs7803405	0.82[CHB][hapmap]
rs7806781	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7808616	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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