Variant report

Variant	rs10253054
Chromosome Location	chr7:112384783-112384784
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112380654..112382930-chr7:112384720..112386358,2	K562	blood:
2	chr7:112383614..112385852-chr7:112389748..112391576,2	K562	blood:
3	chr7:112384010..112386200-chr7:112388223..112390275,2	MCF-7	breast:
4	chr7:112384486..112386062-chr7:112388133..112390075,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10215501	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10216223	0.88[ASN][1000 genomes]
rs10216230	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10226382	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10228483	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10233896	0.83[EUR][1000 genomes]
rs10234058	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10238492	0.82[EUR][1000 genomes]
rs10242871	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10247759	0.88[ASN][1000 genomes]
rs10250630	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10256800	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10257210	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10261844	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10265582	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10269793	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10273060	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10273589	0.96[EUR][1000 genomes]
rs10280638	0.91[ASN][1000 genomes]
rs10280916	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10953717	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11538991	0.87[EUR][1000 genomes]
rs11762442	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1227155	0.96[EUR][1000 genomes]
rs1227163	0.96[EUR][1000 genomes]
rs1614000	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1615468	0.97[ASN][1000 genomes]
rs1922907	0.85[ASN][1000 genomes]
rs28681358	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2905274	0.82[EUR][1000 genomes]
rs3734956	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4490768	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56113805	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56376790	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6466419	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6945635	0.85[ASN][1000 genomes]
rs6946335	0.97[ASN][1000 genomes]
rs6948876	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6950318	0.97[ASN][1000 genomes]
rs6970266	0.85[ASN][1000 genomes]
rs726593	0.88[ASN][1000 genomes]
rs7780098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7806781	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9655816	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112384600-112385000	Enhancers	Fetal Heart	heart
3	chr7:112384600-112385400	Enhancers	Left Ventricle	heart
4	chr7:112384600-112386600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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