Variant report

Variant	rs6970266
Chromosome Location	chr7:112339642-112339643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10215501	0.97[ASN][1000 genomes]
rs10216223	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10216230	0.97[ASN][1000 genomes]
rs10233896	0.82[ASN][1000 genomes]
rs10234058	0.91[ASN][1000 genomes]
rs10238492	0.88[CHD][hapmap]
rs10242871	0.97[ASN][1000 genomes]
rs10247759	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249701	0.84[EUR][1000 genomes]
rs10253054	0.85[ASN][1000 genomes]
rs10261844	0.85[ASN][1000 genomes]
rs10265582	0.88[ASN][1000 genomes]
rs10271752	0.81[EUR][1000 genomes]
rs10273060	0.94[ASN][1000 genomes]
rs10273589	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10280638	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280916	0.82[ASN][1000 genomes]
rs10953717	0.82[ASN][1000 genomes]
rs11770706	0.85[CHB][hapmap]
rs1227158	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1227163	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1227168	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1227171	0.95[CEU][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1227172	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227174	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227176	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1227177	0.85[EUR][1000 genomes]
rs1227178	0.85[EUR][1000 genomes]
rs1227181	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs1227183	0.80[EUR][1000 genomes]
rs1227190	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1238698	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1547554	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs1614000	0.88[ASN][1000 genomes]
rs1615468	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1718944	0.82[JPT][hapmap]
rs1718955	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1718957	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1718967	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs1718969	0.84[EUR][1000 genomes]
rs1796491	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1796492	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1796493	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1796516	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1922907	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996843	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs2028028	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2285541	0.85[CHB][hapmap]
rs2396570	0.88[CHD][hapmap]
rs2396574	0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs2457	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2687267	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs2708296	0.89[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2905274	0.91[ASN][1000 genomes]
rs3957315	0.82[CHD][hapmap]
rs3997335	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs4478510	0.85[CHB][hapmap]
rs4490768	0.88[ASN][1000 genomes]
rs494324	0.82[JPT][hapmap]
rs552304	0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs56113805	0.97[ASN][1000 genomes]
rs56376790	0.85[ASN][1000 genomes]
rs564494	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs62475004	0.85[ASN][1000 genomes]
rs6466419	0.94[ASN][1000 genomes]
rs6466421	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs672911	0.82[JPT][hapmap]
rs685259	0.91[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs6945635	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946335	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6948575	0.84[MEX][hapmap];0.84[TSI][hapmap]
rs6950318	0.83[ASN][1000 genomes]
rs6955834	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs726593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777973	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs7778135	0.84[EUR][1000 genomes]
rs7781871	0.82[CHD][hapmap]
rs7789772	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7803405	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7806781	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs821783	0.91[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs821785	0.95[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs821787	0.95[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs9649356	0.85[EUR][1000 genomes]
rs9655816	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112339400-112342200	Enhancers	Stomach Mucosa	stomach
2	chr7:112339600-112340800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:112339600-112342400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links