Variant report

Variant	rs10215501
Chromosome Location	chr7:112353440-112353441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10216223	1.00[ASN][1000 genomes]
rs10216230	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226382	0.90[EUR][1000 genomes]
rs10234058	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10238492	0.94[CHD][hapmap]
rs10242871	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10247759	1.00[ASN][1000 genomes]
rs10253054	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10257210	0.93[EUR][1000 genomes]
rs10261844	0.88[ASN][1000 genomes]
rs10265582	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10269793	0.85[EUR][1000 genomes]
rs10273060	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10273589	1.00[ASW][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.98[LWK][hapmap];0.89[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10275208	0.82[CHD][hapmap]
rs10280638	0.97[ASN][1000 genomes]
rs10280916	0.85[ASN][1000 genomes]
rs11762737	0.82[CHD][hapmap]
rs11768787	0.81[CHD][hapmap]
rs11770706	0.85[CHB][hapmap]
rs1227155	0.85[EUR][1000 genomes]
rs1227163	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs1227171	0.82[JPT][hapmap];0.85[MEX][hapmap]
rs1227174	0.85[CHB][hapmap];0.89[MEX][hapmap]
rs1227181	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1227190	0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap]
rs1238698	0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap]
rs1530756	0.82[CHD][hapmap];0.81[TSI][hapmap]
rs1547554	0.82[JPT][hapmap]
rs1614000	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1615468	0.86[ASN][1000 genomes]
rs1718944	0.82[JPT][hapmap]
rs1718967	0.82[JPT][hapmap]
rs1796492	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap]
rs1796493	0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap]
rs1796516	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap]
rs1922907	0.97[ASN][1000 genomes]
rs1996843	0.82[JPT][hapmap]
rs2028028	0.81[ASN][1000 genomes]
rs2285541	0.85[CHB][hapmap]
rs2396570	0.94[CHD][hapmap];0.85[TSI][hapmap]
rs2396574	0.82[JPT][hapmap]
rs2457	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap]
rs2687267	0.82[JPT][hapmap]
rs2708296	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs28681358	0.90[EUR][1000 genomes]
rs2905274	0.88[ASN][1000 genomes]
rs3957315	0.88[CHD][hapmap]
rs3997335	0.82[JPT][hapmap]
rs4478510	0.85[CHB][hapmap]
rs4490768	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs494324	0.82[JPT][hapmap]
rs552304	0.82[JPT][hapmap]
rs56113805	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56376790	0.88[ASN][1000 genomes]
rs564494	0.82[JPT][hapmap]
rs62475004	0.82[ASN][1000 genomes]
rs6466419	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6466421	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.85[YRI][hapmap]
rs672911	0.82[JPT][hapmap]
rs685259	0.82[JPT][hapmap]
rs6944843	0.88[CEU][hapmap];0.82[CHD][hapmap];0.85[TSI][hapmap]
rs6945635	0.97[ASN][1000 genomes]
rs6946335	0.86[ASN][1000 genomes]
rs6948876	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6950318	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6970266	0.97[ASN][1000 genomes]
rs726593	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7777973	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7780098	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7781871	0.88[CHD][hapmap];0.85[TSI][hapmap]
rs7803405	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7806781	0.94[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs821783	0.82[JPT][hapmap];0.80[MEX][hapmap]
rs821785	0.82[JPT][hapmap]
rs821787	0.82[JPT][hapmap];0.84[MEX][hapmap]
rs9969347	0.82[JPT][hapmap];0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112353200-112354000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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