Variant report
| Variant | rs6950318 |
|---|---|
| Chromosome Location | chr7:112377055-112377056 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10215501 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10216223 | 0.86[ASN][1000 genomes] |
| rs10216230 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10226382 | 0.85[ASN][1000 genomes] |
| rs10228483 | 0.88[ASN][1000 genomes] |
| rs10234058 | 0.91[ASN][1000 genomes] |
| rs10242871 | 0.85[ASN][1000 genomes] |
| rs10247759 | 0.86[ASN][1000 genomes] |
| rs10250630 | 0.82[ASN][1000 genomes] |
| rs10253054 | 0.97[ASN][1000 genomes] |
| rs10256800 | 0.85[ASN][1000 genomes] |
| rs10257210 | 0.85[ASN][1000 genomes] |
| rs10265582 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10273060 | 0.88[ASN][1000 genomes] |
| rs10280638 | 0.88[ASN][1000 genomes] |
| rs10280916 | 0.82[ASN][1000 genomes] |
| rs11762442 | 0.82[ASN][1000 genomes] |
| rs1614000 | 0.94[ASN][1000 genomes] |
| rs1615468 | 1.00[ASN][1000 genomes] |
| rs1922907 | 0.83[ASN][1000 genomes] |
| rs28681358 | 0.85[ASN][1000 genomes] |
| rs3734956 | 0.85[ASN][1000 genomes] |
| rs4490768 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56113805 | 0.85[ASN][1000 genomes] |
| rs6466419 | 0.88[ASN][1000 genomes] |
| rs6945635 | 0.83[ASN][1000 genomes] |
| rs6946335 | 1.00[ASN][1000 genomes] |
| rs6970266 | 0.83[ASN][1000 genomes] |
| rs726593 | 0.86[ASN][1000 genomes] |
| rs7780098 | 0.91[ASN][1000 genomes] |
| rs7806781 | 0.85[ASN][1000 genomes] |
| rs9655816 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv528753 | chr7:112373996-112378203 | Weak transcription Active TSS | lncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112364600-112388400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:112374800-112384600 | Weak transcription | Fetal Heart | heart |
