Variant report

Variant	rs10228483
Chromosome Location	chr7:112379107-112379108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10233896	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10234058	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10238492	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10242871	0.84[EUR][1000 genomes]
rs10250630	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10253054	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10261844	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10265582	0.88[ASN][1000 genomes]
rs10269793	0.88[EUR][1000 genomes]
rs10273060	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10273589	0.88[EUR][1000 genomes]
rs10280638	0.82[ASN][1000 genomes]
rs10280916	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953717	0.83[EUR][1000 genomes]
rs11538991	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11760733	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11761491	0.83[AMR][1000 genomes]
rs11762442	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11770088	0.85[AMR][1000 genomes]
rs1227155	0.88[EUR][1000 genomes]
rs1227163	0.88[EUR][1000 genomes]
rs1614000	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1615468	0.88[ASN][1000 genomes]
rs2396570	0.81[ASN][1000 genomes]
rs2905274	0.85[EUR][1000 genomes]
rs3734956	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3957315	0.81[ASN][1000 genomes]
rs4490768	0.88[ASN][1000 genomes]
rs56113805	0.85[EUR][1000 genomes]
rs56376790	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466419	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6946335	0.88[ASN][1000 genomes]
rs6948876	0.88[EUR][1000 genomes]
rs6950318	0.88[ASN][1000 genomes]
rs7780098	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112374800-112384600	Weak transcription	Fetal Heart	heart
3	chr7:112378400-112381000	ZNF genes & repeats	Aorta	Aorta
4	chr7:112378800-112379400	Weak transcription	Pancreas	Pancrea
5	chr7:112378800-112380400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:112379000-112382200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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