Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112306398..112307011-chr7:112509008..112509651,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10228483	0.83[AMR][1000 genomes]
rs10232659	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233896	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10238492	0.82[CHB][hapmap]
rs10249203	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250630	0.81[AMR][1000 genomes]
rs10261844	0.87[AMR][1000 genomes]
rs10278994	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10280916	0.87[AMR][1000 genomes]
rs11538991	0.81[AMR][1000 genomes]
rs11763053	0.83[ASN][1000 genomes]
rs11763216	0.86[ASN][1000 genomes]
rs11769472	0.85[CHB][hapmap]
rs11770706	1.00[CHB][hapmap]
rs17581732	0.86[ASN][1000 genomes]
rs1989834	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989835	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2396570	0.82[CHB][hapmap]
rs3734956	0.83[AMR][1000 genomes]
rs3957315	0.82[CHB][hapmap]
rs4478510	1.00[CHB][hapmap]
rs4582492	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376790	0.87[AMR][1000 genomes]
rs62475002	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62475004	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs726593	0.85[CHB][hapmap]
rs73436435	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756867	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756868	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756869	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796920	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804823	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112303000-112308000	Weak transcription	Pancreas	Pancrea

Quick Search: