Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf53-3	chr7:112262436-112262674	NR_110158
2	lnc-C7orf53-3	chr7:112262433-112262674	ENSG00000223646
3	lnc-C7orf53-3	chr7:112262415-112262643	NONHSAT122796

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10232659	0.83[ASN][1000 genomes]
rs10249203	0.83[ASN][1000 genomes]
rs10278994	0.83[ASN][1000 genomes]
rs11761491	0.83[ASN][1000 genomes]
rs11763216	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17581732	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1922901	0.83[ASN][1000 genomes]
rs1989834	0.83[ASN][1000 genomes]
rs1989835	0.83[ASN][1000 genomes]
rs2188548	0.83[ASN][1000 genomes]
rs2285541	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28653710	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582492	0.83[ASN][1000 genomes]
rs62473830	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62475002	0.83[ASN][1000 genomes]
rs73436435	0.83[ASN][1000 genomes]
rs756867	0.83[ASN][1000 genomes]
rs756868	0.83[ASN][1000 genomes]
rs756869	0.83[ASN][1000 genomes]
rs7796920	0.83[ASN][1000 genomes]
rs7804823	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112261600-112264000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:112262200-112262800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:112262200-112262800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:112262200-112263000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:112262400-112262800	Enhancers	HUES6 Cell Line	embryonic stem cell

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