Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10238492	0.82[CHB][hapmap]
rs11763053	0.83[ASN][1000 genomes]
rs11763216	0.86[ASN][1000 genomes]
rs11768435	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769472	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11770458	0.85[EUR][1000 genomes]
rs11770706	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs11771324	0.87[EUR][1000 genomes]
rs17581732	0.86[ASN][1000 genomes]
rs2188548	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285541	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs28653710	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34571206	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4478510	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62473830	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62476688	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6946196	0.84[EUR][1000 genomes]
rs6947690	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6973084	0.87[EUR][1000 genomes]
rs726593	0.85[CHB][hapmap]
rs728461	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs765506	0.91[EUR][1000 genomes]
rs7802889	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv967507	chr7:112234655-112243192	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1922901	C7orf53	cis	cerebellum	SCAN
rs1922901	TMEM168	cis	cerebellum	SCAN
rs1922901	RACGAP1P	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112235000-112236200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:112235400-112237400	Enhancers	Colon Smooth Muscle	Colon
3	chr7:112235600-112236200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:112235800-112236200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:112235800-112236800	Weak transcription	Fetal Stomach	stomach
6	chr7:112235800-112237000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:112236000-112237000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:112236000-112237000	Enhancers	Muscle Satellite Cultured Cells	--

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