Variant report
| Variant | rs17581732 |
|---|---|
| Chromosome Location | chr7:112278353-112278354 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10232659 | 0.86[ASN][1000 genomes] |
| rs10238492 | 0.82[CHB][hapmap] |
| rs10249203 | 0.86[ASN][1000 genomes] |
| rs10278994 | 0.86[ASN][1000 genomes] |
| rs11761491 | 0.86[ASN][1000 genomes] |
| rs11763053 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11763216 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11769472 | 0.85[CHB][hapmap] |
| rs11770706 | 1.00[CHB][hapmap] |
| rs1922901 | 0.86[ASN][1000 genomes] |
| rs1989834 | 0.86[ASN][1000 genomes] |
| rs1989835 | 0.86[ASN][1000 genomes] |
| rs2188548 | 0.86[ASN][1000 genomes] |
| rs2285541 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs2396570 | 0.82[CHB][hapmap] |
| rs28653710 | 0.90[ASN][1000 genomes] |
| rs3957315 | 0.82[CHB][hapmap] |
| rs4478510 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs4582492 | 0.86[ASN][1000 genomes] |
| rs62473830 | 0.90[ASN][1000 genomes] |
| rs62475002 | 0.86[ASN][1000 genomes] |
| rs726593 | 0.85[CHB][hapmap] |
| rs73436435 | 0.86[ASN][1000 genomes] |
| rs756867 | 0.86[ASN][1000 genomes] |
| rs756868 | 0.86[ASN][1000 genomes] |
| rs756869 | 0.86[ASN][1000 genomes] |
| rs7796920 | 0.86[ASN][1000 genomes] |
| rs7804823 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112275800-112278800 | Weak transcription | HSMMtube | muscle |
