Variant report
| Variant | rs28653710 |
|---|---|
| Chromosome Location | chr7:112256705-112256706 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C7orf53-1 | chr7:112256596-112256759 | FPKM1_group_30186_transcript_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11763053 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11763216 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11768435 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11769472 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11770458 | 0.83[EUR][1000 genomes] |
| rs11770706 | 0.87[EUR][1000 genomes] |
| rs11771324 | 0.86[EUR][1000 genomes] |
| rs17581732 | 0.90[ASN][1000 genomes] |
| rs1922901 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2188548 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2285541 | 0.96[ASN][1000 genomes] |
| rs34571206 | 0.93[EUR][1000 genomes] |
| rs4478510 | 0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62473830 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62476688 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6946196 | 0.82[EUR][1000 genomes] |
| rs6947690 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6973084 | 0.86[EUR][1000 genomes] |
| rs728461 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs765506 | 0.90[EUR][1000 genomes] |
| rs7802889 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
