Variant report

Variant	rs6946196
Chromosome Location	chr7:112210668-112210669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11768435	0.86[EUR][1000 genomes]
rs11769472	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11770458	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11770706	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11771324	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1922901	0.84[EUR][1000 genomes]
rs2188548	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28653710	0.82[EUR][1000 genomes]
rs34571206	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4478510	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62473830	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62476688	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6947690	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6973084	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs728461	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs765506	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs765507	0.84[ASN][1000 genomes]
rs7802889	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112207200-112211200	Weak transcription	Fetal Intestine Large	intestine
2	chr7:112207200-112211200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:112207200-112211600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:112207400-112212000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:112207400-112213200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:112207400-112216400	Weak transcription	Psoas Muscle	Psoas
7	chr7:112207800-112211000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:112207800-112211800	Weak transcription	Fetal Heart	heart
9	chr7:112207800-112212200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:112207800-112212400	Weak transcription	Brain Germinal Matrix	brain
11	chr7:112209600-112212000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:112209800-112213800	Weak transcription	Colonic Mucosa	Colon
13	chr7:112210200-112211600	Weak transcription	Stomach Mucosa	stomach
14	chr7:112210400-112211400	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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