Variant report
| Variant | rs11763216 |
|---|---|
| Chromosome Location | chr7:112263055-112263056 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112262666..112264458-chr7:112266284..112269273,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10232659 | 0.86[ASN][1000 genomes] |
| rs10249203 | 0.86[ASN][1000 genomes] |
| rs10278994 | 0.86[ASN][1000 genomes] |
| rs11761491 | 0.86[ASN][1000 genomes] |
| rs11763053 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17581732 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1922901 | 0.86[ASN][1000 genomes] |
| rs1989834 | 0.86[ASN][1000 genomes] |
| rs1989835 | 0.86[ASN][1000 genomes] |
| rs2188548 | 0.86[ASN][1000 genomes] |
| rs2285541 | 0.86[ASN][1000 genomes] |
| rs28653710 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4582492 | 0.86[ASN][1000 genomes] |
| rs62473830 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62475002 | 0.86[ASN][1000 genomes] |
| rs73436435 | 0.86[ASN][1000 genomes] |
| rs756867 | 0.86[ASN][1000 genomes] |
| rs756868 | 0.86[ASN][1000 genomes] |
| rs756869 | 0.86[ASN][1000 genomes] |
| rs7796920 | 0.86[ASN][1000 genomes] |
| rs7804823 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112261600-112264000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
