Variant report

Variant	rs10232659
Chromosome Location	chr7:112313208-112313209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112309536..112311272-chr7:112312196..112314606,2	K562	blood:
2	chr7:112308902..112311272-chr7:112311954..112314606,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10233896	0.82[ASN][1000 genomes]
rs10238492	0.82[CHB][hapmap]
rs10249203	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278994	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761491	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763053	0.83[ASN][1000 genomes]
rs11763216	0.86[ASN][1000 genomes]
rs11769472	0.85[CHB][hapmap]
rs11770706	1.00[CHB][hapmap]
rs17581732	0.86[ASN][1000 genomes]
rs1989834	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989835	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2396570	0.82[CHB][hapmap]
rs3957315	0.82[CHB][hapmap]
rs4478510	1.00[CHB][hapmap]
rs4582492	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62475002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62475004	0.87[ASN][1000 genomes]
rs726593	0.85[CHB][hapmap]
rs73436435	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756867	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756868	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756869	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796920	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804823	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112308000-112316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:112309800-112314800	Weak transcription	HSMMtube	muscle
3	chr7:112310000-112317600	Weak transcription	Placenta	Placenta
4	chr7:112311800-112313400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:112312800-112318200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:112312800-112319000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:112313200-112319000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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