Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10215501	0.82[ASN][1000 genomes]
rs10216223	0.82[ASN][1000 genomes]
rs10216230	0.82[ASN][1000 genomes]
rs10232659	0.87[ASN][1000 genomes]
rs10233896	0.85[EUR][1000 genomes]
rs10234058	0.83[AMR][1000 genomes]
rs10242871	0.82[ASN][1000 genomes]
rs10247759	0.82[ASN][1000 genomes]
rs10249203	0.87[ASN][1000 genomes]
rs10273060	0.83[AMR][1000 genomes]
rs10278994	0.87[ASN][1000 genomes]
rs10953717	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11761491	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1922907	0.85[ASN][1000 genomes]
rs1989834	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1989835	0.87[ASN][1000 genomes]
rs2028028	0.80[ASN][1000 genomes]
rs2905274	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4582492	0.87[ASN][1000 genomes]
rs56113805	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62475002	0.87[ASN][1000 genomes]
rs6945635	0.85[ASN][1000 genomes]
rs6970266	0.85[ASN][1000 genomes]
rs726593	0.82[ASN][1000 genomes]
rs73436435	0.87[ASN][1000 genomes]
rs756867	0.81[ASN][1000 genomes]
rs756868	0.87[ASN][1000 genomes]
rs756869	0.87[ASN][1000 genomes]
rs7796920	0.87[ASN][1000 genomes]
rs7804823	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112308000-112316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:112310000-112317600	Weak transcription	Placenta	Placenta
3	chr7:112312800-112318200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:112312800-112319000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:112313200-112319000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:112313400-112316000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:112313600-112317600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:112313800-112316200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:112314200-112318200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:112314800-112316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:112315000-112317000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:112315000-112317600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:112315200-112316400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:112315400-112315800	Weak transcription	H1 Cell Line	embryonic stem cell

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