Variant report

Variant	rs3734956
Chromosome Location	chr7:112384740-112384741
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112380654..112382930-chr7:112384720..112386358,2	K562	blood:
2	chr7:112383614..112385852-chr7:112389748..112391576,2	K562	blood:
3	chr7:112384010..112386200-chr7:112388223..112390275,2	MCF-7	breast:
4	chr7:112384486..112386062-chr7:112388133..112390075,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10228483	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10233896	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10234058	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10236439	0.87[YRI][hapmap]
rs10236707	0.85[YRI][hapmap]
rs10238492	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10240478	0.87[YRI][hapmap]
rs10241725	0.87[YRI][hapmap]
rs10242871	0.84[EUR][1000 genomes]
rs10243834	0.95[AFR][1000 genomes]
rs10249952	1.00[JPT][hapmap]
rs10250630	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10253054	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10259048	0.87[YRI][hapmap]
rs10261844	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10265582	0.85[ASN][1000 genomes]
rs10269437	0.82[YRI][hapmap]
rs10269793	0.88[EUR][1000 genomes]
rs10272143	0.87[AFR][1000 genomes]
rs10273060	0.90[EUR][1000 genomes]
rs10273589	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs10275208	1.00[JPT][hapmap]
rs10277476	0.82[YRI][hapmap]
rs10280036	0.82[YRI][hapmap]
rs10280117	0.87[YRI][hapmap]
rs10280916	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1044262	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10953717	0.83[EUR][1000 genomes]
rs11538991	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11760733	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11761491	0.83[AMR][1000 genomes]
rs11762442	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11762737	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11768787	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs11770088	0.85[AMR][1000 genomes]
rs11770706	0.82[CHB][hapmap]
rs1227155	0.88[EUR][1000 genomes]
rs1227163	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs1227174	0.82[CHB][hapmap]
rs1227181	0.82[CHB][hapmap]
rs1227190	0.82[CHB][hapmap]
rs1238698	0.82[CHB][hapmap]
rs1530756	1.00[JPT][hapmap]
rs1614000	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1615468	0.85[ASN][1000 genomes]
rs17160078	1.00[JPT][hapmap]
rs17405723	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1796492	0.82[CHB][hapmap]
rs1796493	0.82[CHB][hapmap]
rs1796516	0.82[CHB][hapmap]
rs2285541	0.82[CHB][hapmap]
rs2396570	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2457	0.82[CHB][hapmap]
rs2708296	0.82[CHB][hapmap]
rs2905274	0.85[EUR][1000 genomes]
rs3957315	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs4478510	0.82[CHB][hapmap]
rs4490768	0.85[ASN][1000 genomes]
rs56113805	0.85[EUR][1000 genomes]
rs56376790	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6466419	0.86[EUR][1000 genomes]
rs6466421	0.82[CHB][hapmap]
rs6944843	1.00[JPT][hapmap]
rs6946335	0.85[ASN][1000 genomes]
rs6948876	0.88[EUR][1000 genomes]
rs6950318	0.85[ASN][1000 genomes]
rs7777973	0.82[CHB][hapmap]
rs7780098	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7781871	1.00[JPT][hapmap]
rs7803405	0.82[CHB][hapmap]
rs7806781	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7808616	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112384600-112385000	Enhancers	Fetal Heart	heart
3	chr7:112384600-112385400	Enhancers	Left Ventricle	heart
4	chr7:112384600-112386600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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