Variant report

Variant	rs11762442
Chromosome Location	chr7:112397548-112397549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112389653..112391501-chr7:112395467..112398561,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10226382	0.85[ASN][1000 genomes]
rs10228483	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10233896	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10234058	0.94[EUR][1000 genomes]
rs10238492	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10242871	0.88[EUR][1000 genomes]
rs10250630	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253054	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10256800	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10257210	0.85[ASN][1000 genomes]
rs10261844	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10265582	0.82[ASN][1000 genomes]
rs10269793	0.92[EUR][1000 genomes]
rs10273060	0.94[EUR][1000 genomes]
rs10273589	0.92[EUR][1000 genomes]
rs10280916	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11538991	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11760733	0.93[ASN][1000 genomes]
rs1227155	0.92[EUR][1000 genomes]
rs1227163	0.92[EUR][1000 genomes]
rs1614000	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1615468	0.82[ASN][1000 genomes]
rs28681358	0.85[ASN][1000 genomes]
rs3734956	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4490768	0.82[ASN][1000 genomes]
rs56113805	0.89[EUR][1000 genomes]
rs56376790	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6466419	0.90[EUR][1000 genomes]
rs6946335	0.82[ASN][1000 genomes]
rs6948876	0.92[EUR][1000 genomes]
rs6950318	0.82[ASN][1000 genomes]
rs7780098	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7806781	0.85[ASN][1000 genomes]
rs9655816	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
2	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:112389000-112405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:112389000-112422800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:112389200-112412800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:112390200-112422800	Weak transcription	Thymus	Thymus
7	chr7:112391600-112418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:112393600-112429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:112394600-112406800	Weak transcription	Fetal Lung	lung
10	chr7:112394600-112407200	Weak transcription	Ovary	ovary
11	chr7:112395200-112422600	Weak transcription	Right Ventricle	heart
12	chr7:112395600-112422400	Weak transcription	Aorta	Aorta
13	chr7:112396000-112407000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:112396000-112407200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:112396200-112409000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:112396200-112428600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:112396400-112403400	Weak transcription	Fetal Heart	heart
18	chr7:112397000-112418000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:112397000-112428000	Weak transcription	Fetal Intestine Small	intestine
20	chr7:112397400-112397600	Enhancers	Pancreas	Pancrea
21	chr7:112397400-112398000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:112397400-112422200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links