Variant report

Variant	rs6735143
Chromosome Location	chr2:56049401-56049402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10496056	1.00[ASN][1000 genomes]
rs17279030	1.00[ASN][1000 genomes]
rs2082140	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2867970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34708847	1.00[ASN][1000 genomes]
rs45535043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807723	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72807726	0.91[AMR][1000 genomes]
rs72807741	0.91[AMR][1000 genomes]
rs72924567	1.00[ASN][1000 genomes]
rs73940319	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73940343	1.00[ASN][1000 genomes]
rs7571341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9753376	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9753385	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56048800-56051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:56049000-56050400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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