Variant report

Variant	rs6736353
Chromosome Location	chr2:39082968-39082969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39075448..39080892-chr2:39081993..39084972,5	K562	blood:
2	chr2:39082200..39083996-chr2:39090256..39092735,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163214	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1010859	0.86[AFR][1000 genomes]
rs11681583	0.81[AFR][1000 genomes]
rs2373469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373471	1.00[AFR][1000 genomes]
rs3099937	0.94[EUR][1000 genomes]
rs3100000	0.85[AFR][1000 genomes]
rs3112163	0.87[AFR][1000 genomes]
rs3112165	0.94[EUR][1000 genomes]
rs3112166	0.87[AFR][1000 genomes]
rs3112175	0.81[AFR][1000 genomes]
rs4670900	0.81[AFR][1000 genomes]
rs61736780	0.96[AFR][1000 genomes]
rs72797369	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72797386	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72797389	0.86[AFR][1000 genomes]
rs72797392	1.00[AFR][1000 genomes]
rs72797401	0.82[AFR][1000 genomes]
rs72797402	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv2692	chr2:39065768-39111871	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39006400-39085600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:39030600-39088200	Weak transcription	Fetal Heart	heart
3	chr2:39038800-39095600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:39038800-39102200	Weak transcription	Gastric	stomach
5	chr2:39039000-39085400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:39039000-39090000	Weak transcription	Esophagus	oesophagus
7	chr2:39039000-39101200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:39039000-39102000	Weak transcription	Colonic Mucosa	Colon
9	chr2:39050400-39088000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:39055200-39085600	Weak transcription	Psoas Muscle	Psoas
11	chr2:39057000-39086200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:39058000-39087800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:39062400-39083400	Weak transcription	NHEK	skin
14	chr2:39063600-39088400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:39067200-39090200	Weak transcription	Stomach Mucosa	stomach
16	chr2:39068400-39090600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:39072200-39095400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:39072400-39089200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:39072600-39090800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:39073000-39091200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:39073600-39090200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:39075200-39090800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:39076000-39090600	Strong transcription	Brain Germinal Matrix	brain
24	chr2:39076200-39090600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:39076400-39090800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:39076600-39090800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr2:39078000-39090800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:39078200-39091200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr2:39078400-39090600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:39078800-39084000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:39078800-39090600	Strong transcription	Osteobl	bone
32	chr2:39079200-39086000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:39079200-39086200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:39079400-39090800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr2:39079600-39083000	Strong transcription	Primary hematopoietic stem cells	blood
36	chr2:39079600-39086200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:39079600-39090400	Strong transcription	Fetal Thymus	thymus
38	chr2:39079600-39090800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr2:39079600-39090800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:39079600-39090800	Strong transcription	Fetal Brain Female	brain
41	chr2:39079800-39083200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr2:39079800-39083200	Strong transcription	Brain Substantia Nigra	brain
43	chr2:39079800-39084000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:39079800-39084000	Strong transcription	Brain Angular Gyrus	brain
45	chr2:39079800-39084200	Strong transcription	Ovary	ovary
46	chr2:39079800-39084600	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr2:39079800-39085800	Strong transcription	Thymus	Thymus
48	chr2:39079800-39086600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr2:39079800-39086600	Strong transcription	Liver	Liver
50	chr2:39079800-39089600	Strong transcription	Fetal Stomach	stomach

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