Variant report

Variant	rs11681583
Chromosome Location	chr2:39129935-39129936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39129931..39132831-chr2:39133199..39135082,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1010859	0.92[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10181808	0.81[AMR][1000 genomes]
rs11124655	0.94[EUR][1000 genomes]
rs11689954	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs12617734	0.82[EUR][1000 genomes]
rs12712626	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs13035182	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17422748	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2060743	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2373469	0.81[AFR][1000 genomes]
rs2373471	0.81[AFR][1000 genomes]
rs3099941	0.85[GIH][hapmap]
rs3099942	0.85[GIH][hapmap];0.81[MEX][hapmap]
rs3099945	0.81[CEU][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3099946	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3099948	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3099949	0.84[EUR][1000 genomes]
rs3099955	0.91[AFR][1000 genomes]
rs3099956	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3099957	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs3099958	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3100000	0.82[CHB][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3112159	0.92[ASW][hapmap];0.91[CHB][hapmap]
rs3112163	0.92[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[LWK][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3112166	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3112170	0.81[EUR][1000 genomes]
rs3112172	0.81[AMR][1000 genomes]
rs3112175	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3112191	0.88[JPT][hapmap]
rs373300	0.80[GIH][hapmap]
rs384007	0.87[ASN][1000 genomes]
rs384421	0.87[ASN][1000 genomes]
rs3923144	0.96[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs434696	0.89[ASN][1000 genomes]
rs4602206	0.89[JPT][hapmap]
rs4670266	0.91[CHB][hapmap]
rs4670268	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4670899	0.81[MEX][hapmap]
rs4670900	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6706186	0.90[EUR][1000 genomes]
rs6736353	0.81[AFR][1000 genomes]
rs6738069	0.91[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[ASN][1000 genomes]
rs6754902	0.84[AMR][1000 genomes]
rs72797392	0.81[AFR][1000 genomes]
rs7565111	0.91[CHB][hapmap]
rs8179664	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11681583	DHX57	cis	multi-tissue	Pritchard
rs11681583	MORN2	cis	parietal	SCAN
rs11681583	DHX57	cis	cerebellum	SCAN
rs11681583	DHX57	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39120800-39132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:39126800-39134000	Weak transcription	Aorta	Aorta

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