Variant report

Variant	rs11124655
Chromosome Location	chr2:39131957-39131958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39130479..39132831-chr2:39133417..39135082,2	K562	blood:
2	chr2:39129931..39132831-chr2:39133199..39135082,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1010858	0.81[AMR][1000 genomes]
rs10173240	0.86[JPT][hapmap]
rs10204999	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10779923	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11124653	0.80[EUR][1000 genomes]
rs11124654	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11681583	0.94[EUR][1000 genomes]
rs11689954	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs12617734	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12621073	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12623330	0.87[JPT][hapmap]
rs12712621	0.93[JPT][hapmap]
rs12712625	0.80[JPT][hapmap]
rs12712627	0.80[JPT][hapmap]
rs12712628	0.82[AMR][1000 genomes]
rs13029388	0.82[JPT][hapmap]
rs13029406	0.86[JPT][hapmap]
rs13383541	0.87[JPT][hapmap]
rs1530852	0.86[JPT][hapmap]
rs1530853	0.86[JPT][hapmap]
rs1868867	0.84[ASN][1000 genomes]
rs1901289	0.88[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs1979142	0.86[JPT][hapmap]
rs2060743	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2373473	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs3099945	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs3099946	0.92[EUR][1000 genomes]
rs3099948	0.89[EUR][1000 genomes]
rs3099949	0.89[EUR][1000 genomes]
rs3099959	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs3112170	0.86[EUR][1000 genomes]
rs3112172	0.84[EUR][1000 genomes]
rs373300	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3770681	0.86[JPT][hapmap]
rs390008	0.85[ASN][1000 genomes]
rs3923144	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4265996	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4670267	0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4670899	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs4670900	0.91[EUR][1000 genomes]
rs6544180	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6706091	0.82[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6706186	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6744514	0.88[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs7419616	0.86[JPT][hapmap]
rs7565111	0.87[JPT][hapmap]
rs7589162	0.87[JPT][hapmap]
rs7598922	0.86[JPT][hapmap]
rs8179664	0.83[EUR][1000 genomes]
rs9808136	0.89[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11124655	DHX57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39120800-39132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:39126800-39134000	Weak transcription	Aorta	Aorta

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