Variant report

Variant	rs1868867
Chromosome Location	chr2:39139916-39139917
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39139462..39141129-chr2:39152347..39155038,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10173240	0.86[JPT][hapmap]
rs10204999	0.85[ASN][1000 genomes]
rs10779923	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11124655	0.84[ASN][1000 genomes]
rs11689954	0.81[JPT][hapmap]
rs12617734	0.81[ASN][1000 genomes]
rs12621073	0.82[ASN][1000 genomes]
rs12623330	0.87[JPT][hapmap]
rs12712621	0.93[JPT][hapmap]
rs12712625	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs12712627	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs13029388	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs13029406	0.86[JPT][hapmap]
rs13383541	0.87[JPT][hapmap]
rs1530852	0.86[JPT][hapmap]
rs1530853	0.86[JPT][hapmap]
rs1901289	0.88[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1979142	0.86[JPT][hapmap]
rs3099956	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3099959	0.84[CHB][hapmap]
rs3112175	0.90[EUR][1000 genomes]
rs373300	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3770681	0.86[JPT][hapmap]
rs389023	0.87[ASN][1000 genomes]
rs390008	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4133043	0.87[AMR][1000 genomes]
rs4265996	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670267	0.82[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6544180	0.81[ASN][1000 genomes]
rs6706091	0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs6706186	0.98[ASN][1000 genomes]
rs7419616	0.86[JPT][hapmap]
rs7565111	0.90[CEU][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7586929	0.85[AMR][1000 genomes]
rs7589162	0.87[JPT][hapmap]
rs7598922	0.86[JPT][hapmap]
rs9808136	0.80[JPT][hapmap]
rs986019	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1868867	DHX57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:39136200-39140200	Weak transcription	HepG2	liver
3	chr2:39138000-39143000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:39139000-39140800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:39139600-39150000	Weak transcription	Psoas Muscle	Psoas

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