Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1010859	1.00[CHB][hapmap]
rs10173240	0.84[JPT][hapmap]
rs10779923	0.93[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11689954	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs12623330	0.86[JPT][hapmap]
rs12712621	0.93[JPT][hapmap]
rs12712625	0.81[JPT][hapmap]
rs12712626	0.81[CHB][hapmap]
rs12712627	0.81[JPT][hapmap]
rs13029406	0.85[JPT][hapmap]
rs13383541	0.86[JPT][hapmap]
rs1530852	0.85[JPT][hapmap]
rs1530853	0.85[JPT][hapmap]
rs1868867	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1979142	0.85[JPT][hapmap]
rs2060743	0.81[YRI][hapmap]
rs2373467	0.82[AFR][1000 genomes]
rs3099955	0.87[EUR][1000 genomes]
rs3099956	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3099958	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3112159	0.81[CHB][hapmap]
rs3112163	0.90[CHB][hapmap]
rs3112166	0.82[EUR][1000 genomes]
rs3112175	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs373300	0.86[JPT][hapmap]
rs3770681	0.85[JPT][hapmap]
rs3923144	0.90[CHB][hapmap];0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4133043	0.85[AMR][1000 genomes]
rs4265996	0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs4670266	0.84[CHB][hapmap]
rs4670268	0.80[CHB][hapmap]
rs4670900	0.81[ASN][1000 genomes]
rs6738069	0.81[CHB][hapmap]
rs7419616	0.85[JPT][hapmap]
rs7586929	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7589162	0.86[JPT][hapmap]
rs7598922	0.85[JPT][hapmap]
rs8179664	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7565111	DHX57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39103800-39120200	Weak transcription	Left Ventricle	heart
2	chr2:39104200-39119400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:39104200-39122200	Weak transcription	Ovary	ovary
4	chr2:39104200-39129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:39110400-39120600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:39113600-39118800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: