Variant report

Variant	rs3099958
Chromosome Location	chr2:39124955-39124956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:38977007..38978557-chr2:39123696..39126377,2	K562	blood:
2	chr2:38976866..38979438-chr2:39122929..39126377,4	K562	blood:
3	chr2:39120189..39122638-chr2:39123945..39125546,2	K562	blood:

Variant related genes	Relation type
ENSG00000152147	Chromatin interaction
ENSG00000115875	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010858	0.85[EUR][1000 genomes]
rs1010859	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10181808	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10204999	0.85[EUR][1000 genomes]
rs11124654	0.94[EUR][1000 genomes]
rs11681583	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11689954	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs12621073	0.92[EUR][1000 genomes]
rs12712626	0.81[CHB][hapmap]
rs12712628	0.93[EUR][1000 genomes]
rs13035182	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17422748	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3099942	0.81[EUR][1000 genomes]
rs3099946	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3099955	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3099956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3099957	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs3099959	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3100000	0.87[YRI][hapmap];0.91[AFR][1000 genomes]
rs3112159	0.81[CHB][hapmap]
rs3112163	0.90[CHB][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes]
rs3112166	0.90[AFR][1000 genomes]
rs3112175	0.99[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3112191	0.88[JPT][hapmap]
rs373300	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs384007	0.83[AMR][1000 genomes]
rs384421	0.83[AMR][1000 genomes]
rs3923144	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs434696	0.83[AMR][1000 genomes]
rs4602206	0.89[JPT][hapmap]
rs4670266	0.84[CHB][hapmap]
rs4670268	0.88[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4670899	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs4670900	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61736780	0.84[AFR][1000 genomes]
rs6544180	0.89[EUR][1000 genomes]
rs6706091	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs6738069	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6744514	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs6754902	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72797376	0.82[AFR][1000 genomes]
rs72797386	0.81[AFR][1000 genomes]
rs72797402	0.82[AFR][1000 genomes]
rs7565111	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7586929	0.83[ASN][1000 genomes]
rs8179664	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808136	0.88[CEU][hapmap];0.93[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39104200-39129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:39110200-39186800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:39120800-39132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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